View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_4 (Length: 500)
Name: NF8509_low_4
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Complemental strand, 3002422 - 3001953
Alignment:
| Q |
18 |
ctagattatcctgtctgctgcagtatttgctgcatgtagtccttggcacatagagtgatcagtgtggtatgtgatttctgaaattgacacattcattctc |
117 |
Q |
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| T |
3002422 |
ctagattatcctgtctgctgcagtacttgctgcatgtagtccttggcacatagagtgatcagtgtggtatgtgatttctgaaattgacacattcattctc |
3002323 |
T |
|
| Q |
118 |
acaccagatactaatatttccataaacaaaaatgttacctc-aagttaaacaaaataaataggcaccgagggtttggtgctgggaaataaagtccacgtc |
216 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3002322 |
acaccagatactaatatttccataaacaaagatgttacctctaagttaaacaaaataaataggcaccgagggtttggtgctgggaaataaagtccacgtc |
3002223 |
T |
|
| Q |
217 |
gttataaaaaattgttagaaatttgaagtaacaacattcactatccatcccatgtgataacaaaccagaaagtcaaactgaggtgaaaaaacaacattca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3002222 |
gttataaaaaattgttagaaatttgaagtaacaacattcactatccatcccatgtgataacaaaccagaaagtcaaactgaggtgaaaaaacaacattca |
3002123 |
T |
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| Q |
317 |
ctatccattccatgcgatgacaaactaacaaaaacaataatatattaatttaaactacttactgagcgatatccttgagtagtagtcaatgtcgtagaat |
416 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3002122 |
ctatccattccatgcgatggcaaactaa-aaaaacaataatatattaatttaaactacttactgagcgatatccttgagtagtagtcaatgtcgtagaat |
3002024 |
T |
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| Q |
417 |
tgtctgctccaggataactatgtaaaaacaagtcaaaagtcataaagtttggacaagaaactgcagcaatt |
487 |
Q |
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| T |
3002023 |
tgtctgctccaagataactatgtaaaaacaagtcaaaagtcataaagtttggacaagaaactgcagcaatt |
3001953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 3285237 - 3285318
Alignment:
| Q |
19 |
tagattatcctgtctgctgcagtatttgctgcatgtagtccttggcacatagagtgatcagtgtggtatgtgatttctgaaat |
101 |
Q |
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|||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| | ||||||||||| |||| |
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| T |
3285237 |
tagactatcctgtctgctgcagtacttgctacatgtagtccttggcacatagagtgattagtgt-gcatgtgatttctaaaat |
3285318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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