View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_high_1 (Length: 518)
Name: NF8510_high_1
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 143 - 502
Target Start/End: Complemental strand, 55245768 - 55245406
Alignment:
| Q |
143 |
aattacactatagcactacatggataactcttattcaaaaacataccctagtaattgtgaggagctggctaattcaagcttgaagaagaggttcctcaag |
242 |
Q |
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| T |
55245768 |
aattacactatagcactacatggataactcttattcaaaaacataccctagtaattgtgaggagctggctaattcaagcttgaagaagaggttcctcaag |
55245669 |
T |
|
| Q |
243 |
agagctaaagaacagaggtccaggctctacatactaaagaggtgcattattatgttactatgttggcacaagtacgaacaatattaattcatttactaca |
342 |
Q |
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| T |
55245668 |
agagctaaagaagagaggtccaggctctacatactaaagaggtgcattattatgttactatgttggcacaagtacgaacaatattaattcatttactaca |
55245569 |
T |
|
| Q |
343 |
caaaccccactattattttttaaggtaacattaattctagtagctagtttttattattttag----tgactactatataattgtggtattggtgttgtgt |
438 |
Q |
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| T |
55245568 |
caatccacactattat-ttttaaggtaacattaattctagtagctagtttttattgttttagtgactgactactatataattgtggtattggtgttgtgt |
55245470 |
T |
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| Q |
439 |
tatatagtagatatttgttagaaaaaacaacatatgaatacacaaaatttgttaacgtggtttg |
502 |
Q |
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| T |
55245469 |
tatatagtagatatttgttagaaaaaacaacatatgaatacacaaaatttgttaacgtggtttg |
55245406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 55245906 - 55245833
Alignment:
| Q |
1 |
tatgagtcagatcgtaccaaggaccacaatgctagctactcgacactgttgcccatacataccccaattactac |
74 |
Q |
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| T |
55245906 |
tatgagtcagatcgtaccaaggaccacaatgctagctactcgacactgttgcccatacataccccaattactac |
55245833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 8270071 - 8269967
Alignment:
| Q |
215 |
ttcaagcttgaagaagaggttcctcaagagagctaaagaacagaggtccaggctctacatactaaagaggtgcattattatgttactatgttggcacaag |
314 |
Q |
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|||||||||||||||||||||||| || | || || ||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||| ||| |
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| T |
8270071 |
ttcaagcttgaagaagaggttccttaacaaggcaaaggaacagaggtctaggctctatatattaaagaggtgcattattatattactatgttggcaaaag |
8269972 |
T |
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| Q |
315 |
tacga |
319 |
Q |
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||||| |
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| T |
8269971 |
tacga |
8269967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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