View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_high_10 (Length: 309)
Name: NF8510_high_10
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_high_10 |
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| [»] chr4 (6 HSPs) |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 309
Target Start/End: Original strand, 11695831 - 11696120
Alignment:
| Q |
20 |
ataggtacttaaaaacacacaattttgttatctctgcggtactggattagtccattcttaaaatggactaatttagaacagcagagattataacttctaa |
119 |
Q |
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| T |
11695831 |
ataggtacttacaaacacacaaatttgttatctctgcggttctgggttagtccattcttaaaatggactaatttagaacagcagagattataacttctaa |
11695930 |
T |
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| Q |
120 |
cagacttgaaaatacatctttagttttatttatttttatcaaataagattgagaatgaattgtgaatgttatatttaggtgtggaaatggcagagagggc |
219 |
Q |
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| T |
11695931 |
cagacttgaaaatacatgtttagttttatttatttttatgaaatgagattgagaatgaattgtgaatgttatatttaggtgtggaaatggcagagagggc |
11696030 |
T |
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| Q |
220 |
atcatattatggaattcaagggactttgatatcatatctaacaggacaactcaaacaaagcactgtaacagttgctaagaatgtcaatat |
309 |
Q |
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| T |
11696031 |
atcatattatggaattcaagggaatttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatat |
11696120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 173 - 284
Target Start/End: Original strand, 11797825 - 11797936
Alignment:
| Q |
173 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggactttgatatcatatctaacaggacaactca |
272 |
Q |
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| T |
11797825 |
aatgaattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacaggaccactca |
11797924 |
T |
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| Q |
273 |
aacaaagcactg |
284 |
Q |
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| T |
11797925 |
aacaaagcactg |
11797936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 173 - 303
Target Start/End: Original strand, 11701781 - 11701911
Alignment:
| Q |
173 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggactttgatatcatatctaacaggacaactca |
272 |
Q |
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| T |
11701781 |
aatggattatgaatgttatgtttaggtgtggaagtggcagagagggtatcatattatggaattcaagggaatttgatatcatatctaacagggccactca |
11701880 |
T |
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| Q |
273 |
aacaaagcactgtaacagttgctaagaatgt |
303 |
Q |
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| T |
11701881 |
aacagagcactgcaacagctgctaagaatgt |
11701911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 309
Target Start/End: Original strand, 11675888 - 11676024
Alignment:
| Q |
173 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggactttgatatcatatctaacaggacaactca |
272 |
Q |
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| T |
11675888 |
aatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacaggaccactca |
11675987 |
T |
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| Q |
273 |
aacaaagcactgtaacagttgctaagaatgtcaatat |
309 |
Q |
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| T |
11675988 |
aacaaagcactgcaactgctgctgagaatgtgaatat |
11676024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 309
Target Start/End: Original strand, 11684167 - 11684303
Alignment:
| Q |
173 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggactttgatatcatatctaacaggacaactca |
272 |
Q |
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| T |
11684167 |
aatgagttatgaatgttttgtataggtgtggaagtggcagagagggtatcatattatgggattcaagggaacttgatatcatatctaacaggaccactca |
11684266 |
T |
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| Q |
273 |
aacaaagcactgtaacagttgctaagaatgtcaatat |
309 |
Q |
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| T |
11684267 |
aacaaagcactgcaactgctgctgagaatgtgaatat |
11684303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 177 - 303
Target Start/End: Original strand, 11778968 - 11779093
Alignment:
| Q |
177 |
aattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggactttgatatcatatctaacaggacaactcaaaca |
276 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||| ||||||| ||| || | || | |||||||||||||||||||| | ||||||||| |
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| T |
11778968 |
aattgtgaatgtta-atttaggtgtggaggtggcagagaggatgtcatattttggggttaagggaaacttgatatcatatctaacagggccactcaaaca |
11779066 |
T |
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| Q |
277 |
aagcactgtaacagttgctaagaatgt |
303 |
Q |
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| T |
11779067 |
aagcactgcaactgctgctaagaatgt |
11779093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 309
Target Start/End: Original strand, 16426 - 16562
Alignment:
| Q |
173 |
aatgaattgtgaatgttatatttaggtgtggaaatggcagagagggcatcatattatggaattcaagggactttgatatcatatctaacaggacaactca |
272 |
Q |
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|||| ||| |||||||||| ||||||||||||| | ||||||||| ||||||| ||| ||| | || | |||||||||||||||||||||| ||||| |
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| T |
16426 |
aatggattatgaatgttatgtttaggtgtggaagtagcagagaggatatcatatattgggattaagggaaacttgatatcatatctaacaggaccactca |
16525 |
T |
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| Q |
273 |
aacaaagcactgtaacagttgctaagaatgtcaatat |
309 |
Q |
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| T |
16526 |
aacaaagcactgcaacagctgctaagaatgtgaatat |
16562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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