View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8510_high_11 (Length: 301)
Name: NF8510_high_11
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 27 - 283
Target Start/End: Complemental strand, 31103454 - 31103181
Alignment:
| Q |
27 |
gacatcaacatcgataataatttgaccatataacataattgaatgcaat-------------cactcacacaagttagacacatctttgattaaaaatgt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31103454 |
gacatcaacatcgataataatttgaccatataacataattgaatgcaattacgttcgttagacactcacacaagttagacacatctttgattaaaaatgt |
31103355 |
T |
|
| Q |
114 |
cg----gagctaaaaggaaattatatagtatgaatatccttaattnnnnnnnnnnnnnnnnngatatccatttttaaagcattgttaatgtttgagtcat |
209 |
Q |
| |
|
|| |||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31103354 |
cgatcggagctaaaaggaaaatatatagtatcaatatccttaattaaaaaagaaaagaaaaagatatccatttttaaagcattgttaatgtttcagtcat |
31103255 |
T |
|
| Q |
210 |
agaagttgaatgagaagtatacgttaaagtaaaacatgaaattgagtaccaagatccggagtataatagtaaat |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31103254 |
agaagttgaatgagaagtatacgttaaagtaaaacatgaaattgagtaccaagatccggagtataatactaaat |
31103181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University