View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8510_high_13 (Length: 231)

Name: NF8510_high_13
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8510_high_13
NF8510_high_13
[»] chr5 (3 HSPs)
chr5 (11-208)||(1271171-1271367)
chr5 (154-214)||(41215235-41215295)
chr5 (154-214)||(31895513-31895572)
[»] chr1 (3 HSPs)
chr1 (153-214)||(11080960-11081021)
chr1 (154-207)||(37186817-37186870)
chr1 (154-214)||(45751027-45751087)
[»] chr2 (3 HSPs)
chr2 (154-214)||(22999143-22999203)
chr2 (154-214)||(22382333-22382393)
chr2 (154-214)||(22914359-22914419)
[»] chr6 (1 HSPs)
chr6 (157-207)||(1266745-1266795)
[»] chr4 (3 HSPs)
chr4 (154-212)||(32057724-32057782)
chr4 (154-210)||(37759501-37759557)
chr4 (153-209)||(38670992-38671047)
[»] chr3 (4 HSPs)
chr3 (154-208)||(27157999-27158053)
chr3 (170-209)||(46008908-46008947)
chr3 (153-210)||(7131502-7131559)
chr3 (155-211)||(54923557-54923613)
[»] chr8 (4 HSPs)
chr8 (154-211)||(24197828-24197885)
chr8 (155-208)||(37820895-37820948)
chr8 (154-207)||(31291294-31291347)
chr8 (154-211)||(32778569-32778626)
[»] scaffold0160 (1 HSPs)
scaffold0160 (154-214)||(22150-22210)
[»] chr7 (4 HSPs)
chr7 (154-214)||(46021431-46021491)
chr7 (163-214)||(6328183-6328234)
chr7 (154-207)||(8037619-8037672)
chr7 (154-214)||(16842048-16842108)
[»] scaffold0223 (1 HSPs)
scaffold0223 (156-214)||(22988-23046)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 1271367 - 1271171
Alignment:
Q  11 tgagaagaaaataggaaattgggccaaagtgtattttaatatattaaaatgaagtaactcacgattccattctatttcttttaaattgaaggagaacaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  1271367 tgagaagaaaataggaaattgggccaaagtgtattttaatatattaaaatgaagtaactcacgattccattatatttcttttaaattgaaggacaacaaa 1271268  T
Q  111 ttgagagtaagtgatgggatgagatgaaatacnnnnnnnnnaatagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtat 208  Q
    ||||||||||||||||||||||||||||||||          ||||||||| ||||||||||||||||| |||||||| ||| | |||||||||||||    
T  1271267 ttgagagtaagtgatgggatgagatgaaatacatttttttg-atagatagacgagatgacaaaacaatcataaactcacacatataaaatggaggtat 1271171  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 41215235 - 41215295
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcggggt 214  Q
    ||||| || ||||||||||||| ||| |||||||||| ||| ||| |||||||||||||||    
T  41215235 tagattgacgagatgacaaaactatcataaactcatatacataaagtggaggtatcggggt 41215295  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 31895513 - 31895572
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcggggt 214  Q
    ||||||||||| |||||||||||||  ||||| ||||||||| || |||||||| ||||||    
T  31895513 tagatagatgaaatgacaaaacaattataaacccatacacac-aagtggaggtaccggggt 31895572  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 11080960 - 11081021
Alignment:
Q  153 atagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcggggt 214  Q
    ||||||||| ||||||||||||| ||| || ||||||||||| ||| |||||||||||||||    
T  11080960 atagatagacgagatgacaaaaccatcatatactcatacacataaagtggaggtatcggggt 11081021  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 37186817 - 37186870
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggta 207  Q
    |||||||| ||||||||||| | ||| |||||||| ||||||||| ||||||||    
T  37186817 tagatagaagagatgacaaagccatcataaactcaaacacacaaagtggaggta 37186870  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 45751027 - 45751087
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcggggt 214  Q
    |||||||||||||||||||||| ||| |||||||  | ||| ||||| |||||| ||||||    
T  45751027 tagatagatgagatgacaaaaccatcataaactcccatacataaaatagaggtaccggggt 45751087  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 22999203 - 22999143
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcggggt 214  Q
    |||||||| ||||||||||||| ||| |||||||| ||||||||| ||||||| |||||||    
T  22999203 tagatagacgagatgacaaaaccatcataaactcacacacacaaagtggaggtgtcggggt 22999143  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 22382333 - 22382393
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcggggt 214  Q
    |||||||| ||||||||||||| ||| |||||||| | ||||||| ||||||| |||||||    
T  22382333 tagatagacgagatgacaaaaccatcataaactcacatacacaaagtggaggtgtcggggt 22382393  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 22914359 - 22914419
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcggggt 214  Q
    |||||||| ||||||||||||| ||| |||||||| | ||||||| ||||||| |||||||    
T  22914359 tagatagacgagatgacaaaaccatcataaactcacatacacaaagtggaggtgtcggggt 22914419  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 1266745 - 1266795
Alignment:
Q  157 atagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggta 207  Q
    |||||||||||| |||||| ||| |||||||| ||||||||||||||||||    
T  1266745 atagatgagatggcaaaactatcataaactcacacacacaaaatggaggta 1266795  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 32057724 - 32057782
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcggg 212  Q
    |||||||| ||||||||||||| ||| |||||||| ||||||||| |||||||| ||||    
T  32057724 tagatagacgagatgacaaaaccatcataaactcacacacacaaagtggaggtaccggg 32057782  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 37759557 - 37759501
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcg 210  Q
    |||||||| ||||||||||| | ||| |||||||| ||||||||| |||||| ||||    
T  37759557 tagatagaagagatgacaaagccatcataaactcacacacacaaagtggaggaatcg 37759501  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 38671047 - 38670992
Alignment:
Q  153 atagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatc 209  Q
    ||||||||| ||||||||||||| | | |||||||| |||||| |||||||||||||    
T  38671047 atagatagaggagatgacaaaaccaccataaactcacacacac-aaatggaggtatc 38670992  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 27158053 - 27157999
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtat 208  Q
    ||||||||||||||| |||||| ||| |||||||||||||| ||||| |||||||    
T  27158053 tagatagatgagatggcaaaaccatcataaactcatacacataaaatagaggtat 27157999  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 46008947 - 46008908
Alignment:
Q  170 caaaacaatcgtaaactcatacacacaaaatggaggtatc 209  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  46008947 caaaaccatcgtaaactcatacacacaaagtggaggtatc 46008908  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 7131502 - 7131559
Alignment:
Q  153 atagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcg 210  Q
    ||||||||| |||||| |||| | ||| |||||||| ||||||||| |||||||||||    
T  7131502 atagatagaagagatggcaaagccatcataaactcacacacacaaagtggaggtatcg 7131559  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 54923613 - 54923557
Alignment:
Q  155 agatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcgg 211  Q
    ||||||| ||||||||||||  ||| |||| ||| |||||||||||||| |||||||    
T  54923613 agatagacgagatgacaaaatcatcataaattcacacacacaaaatggaagtatcgg 54923557  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 24197828 - 24197885
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcgg 211  Q
    |||||||| ||||||||||||| ||| |||||||| ||||| ||| ||||||||||||    
T  24197828 tagatagaagagatgacaaaaccatcataaactcacacacataaagtggaggtatcgg 24197885  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 37820895 - 37820948
Alignment:
Q  155 agatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtat 208  Q
    ||||||| ||||||||||||| ||| |||||||| ||||||||| |||||||||    
T  37820895 agatagaagagatgacaaaaccatcataaactcacacacacaaagtggaggtat 37820948  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 31291347 - 31291294
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggta 207  Q
    |||||||| ||||||||||||| ||| |||||||| | |||||||||| |||||    
T  31291347 tagatagacgagatgacaaaaccatcataaactcacaaacacaaaatgaaggta 31291294  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 32778626 - 32778569
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcgg 211  Q
    |||||||| ||||||||||| | ||| ||||| || ||||||||| ||||||||||||    
T  32778626 tagatagacgagatgacaaagccatcataaacccacacacacaaagtggaggtatcgg 32778569  T

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Target: scaffold0160 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Complemental strand, 22210 - 22150
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcggggt 214  Q
    |||||||| |||||||||||   ||| |||||||| ||||||||| |||||||||||||||    
T  22210 tagatagacgagatgacaaagtcatcataaactcacacacacaaagtggaggtatcggggt 22150  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 46021431 - 46021491
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcggggt 214  Q
    |||||||| |||||| |||| | ||| |||||||| |||||||||||||||||| ||||||    
T  46021431 tagatagaagagatggcaaagccatcataaactcacacacacaaaatggaggtaccggggt 46021491  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 6328183 - 6328234
Alignment:
Q  163 gagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcggggt 214  Q
    ||||||||||||| ||| |||||||| ||||| ||| |||||||||||||||    
T  6328183 gagatgacaaaaccatcataaactcacacacataaagtggaggtatcggggt 6328234  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 8037672 - 8037619
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggta 207  Q
    |||||||| |||||| |||||  ||| |||||||||||||| ||||||||||||    
T  8037672 tagatagacgagatggcaaaatcatcataaactcatacacataaaatggaggta 8037619  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 16842048 - 16842108
Alignment:
Q  154 tagatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcggggt 214  Q
    |||||||| |||||   ||||| ||| |||||||||||||| ||| |||||||||||||||    
T  16842048 tagatagacgagatagaaaaaccatcataaactcatacacataaagtggaggtatcggggt 16842108  T

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Target: scaffold0223 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 23046 - 22988
Alignment:
Q  156 gatagatgagatgacaaaacaatcgtaaactcatacacacaaaatggaggtatcggggt 214  Q
    |||||| | ||||||||||| ||| |||||||| ||||||||| |||||||| ||||||    
T  23046 gatagacgggatgacaaaaccatcataaactcaaacacacaaagtggaggtaccggggt 22988  T

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