View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_high_4 (Length: 407)
Name: NF8510_high_4
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_high_4 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 21 - 381
Target Start/End: Complemental strand, 33025754 - 33025392
Alignment:
| Q |
21 |
tacttattgaaattgctcatgataaggtttggtttaacctttgactataatgtgtaatgggagcttcaaatcagatgatctaacttaaatttagtgnnnn |
120 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33025754 |
tacttattgaaattgctcatgataagggttggtttaacctttgactataatgtgtaatgggagcttcaaatcagatgatctaacttaaatttagtgaaaa |
33025655 |
T |
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| Q |
121 |
nnnnnnnnnnng---gaggattgaattgtgttgtggcttttttaaaaattacttctgatacctcactcaattaacaaatacgatagcattaacattccta |
217 |
Q |
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| T |
33025654 |
acaaaaaaaaaaaaagaggattgaattgtgttgtagcttttt-aaaaattacttctgatacctcactcaattaacaaatacgatagcattaacattccta |
33025556 |
T |
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| Q |
218 |
tttaaaaattctttttcaagcactaattaaaccaaaaatcaatttcttgagttttcattatgcagaagtcttaagaatgagaagaaaacatcgatatcat |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
33025555 |
tttaaaaattctttttcaagcactaattaaacaaaaaatcaatttcttgagttttcattatggagaagtcttaagaatgagaataaaacatcgatatcat |
33025456 |
T |
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| Q |
318 |
gaataacaagaacttgtataatcatgagatcaaaagttatacaaaagattcataattaactaca |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33025455 |
gaataacaagaacttgtataatcatgagatcaaaagttatacaaaagattcataattaactaca |
33025392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 21367500 - 21367467
Alignment:
| Q |
27 |
ttgaaattgctcatgataaggtttggtttaacct |
60 |
Q |
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| T |
21367500 |
ttgaaattgctcatgataagggttggtttaacct |
21367467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 12025 - 11992
Alignment:
| Q |
27 |
ttgaaattgctcatgataaggtttggtttaacct |
60 |
Q |
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| T |
12025 |
ttgaaattgctcatgataagggttggtttaacct |
11992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 23901069 - 23901102
Alignment:
| Q |
27 |
ttgaaattgctcatgataaggtttggtttaacct |
60 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
23901069 |
ttgaaattgctcatgataagggttggtttaacct |
23901102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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