View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8510_high_6 (Length: 369)

Name: NF8510_high_6
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8510_high_6
NF8510_high_6
[»] chr4 (5 HSPs)
chr4 (17-351)||(7655151-7655485)
chr4 (65-342)||(7616054-7616331)
chr4 (74-346)||(7629452-7629724)
chr4 (71-346)||(7637895-7638170)
chr4 (80-346)||(7607073-7607339)
[»] chr7 (3 HSPs)
chr7 (71-341)||(8935122-8935392)
chr7 (71-307)||(8934215-8934451)
chr7 (71-165)||(8929902-8929996)
[»] chr6 (1 HSPs)
chr6 (109-241)||(6501373-6501505)
[»] chr3 (3 HSPs)
chr3 (83-297)||(40146454-40146668)
chr3 (129-288)||(40409454-40409613)
chr3 (83-285)||(8103316-8103518)
[»] chr8 (1 HSPs)
chr8 (83-198)||(15190351-15190466)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 7655485 - 7655151
Alignment:
Q  17 tagttcctaacgtcgttgaaaggaaaaaatgaatggacaaccgaaggaacatatgtgggttttaggatgtcagcaacacaagtattctttgctgcagcat 116  Q
    ||||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  7655485 tagtttctaacgtcattgaaaggaaaaaatgaacgaacaaccgaaggaacatatgtgggttttaggatgtcagcaacacaagtatccttggctgcagcat 7655386  T
Q  117 gtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgtcttcgtgttctgtaattttgagacgaccggcaagaggttggaaaaa 216  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7655385 gtataaagtttacacctgcattattgcatgttacagaacacgagacaatgctgtcttcgtgttctgtaattttgagacgaccggcaagaggttggaaaaa 7655286  T
Q  217 ggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaaaggatggtgataaagaaggccttttttattggttggataaagtaga 316  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7655285 ggaaagggctgaggataaagagtgtgtcagccgttgaatttggtctgatgctaaaggatggtgataaagaaggccttttttattggttggataaagtaga 7655186  T
Q  317 aattggggatcccatggagttaaatcgattttatg 351  Q
    |||||| ||||||||||||||||||||||||||||    
T  7655185 aattggagatcccatggagttaaatcgattttatg 7655151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 65 - 342
Target Start/End: Original strand, 7616054 - 7616331
Alignment:
Q  65 acatatgtgggttttaggatgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacag 164  Q
    ||||| || |||| ||||||||||||||||||||||||||  ||||||||||| | ||||  |||||||||||| |||||| | |||||||||||||| |    
T  7616054 acataggtaggttctaggatgtcagcaacacaagtattctcagctgcagcatggataaagagtacacctgcattgttgcatataacagaacacgagacgg 7616153  T
Q  165 tgttgtcttcgtgttctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctga 264  Q
    ||||||| | ||| || || ||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||  |     
T  7616154 tgttgtcattgtgctccgttattttgagacggccggaaagaggttggaaaaaggcaagggcagaggacaaagagtgtctcagccgttggatttggttagc 7616253  T
Q  265 tgctaaaggatggtgataaagaaggccttttttattggttggataaagtagaaattggggatcccatggagttaaatc 342  Q
    | | |  ||||||||||||||||| || |||   ||||||| |  |||||||||  || ||||||||||||| |||||    
T  7616254 ttcaactggatggtgataaagaagaccctttgggttggttgtaccaagtagaaaccggagatcccatggagtcaaatc 7616331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 74 - 346
Target Start/End: Original strand, 7629452 - 7629724
Alignment:
Q  74 ggttttaggatgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgtctt 173  Q
    |||| ||||||||||||||||||||||||||  |||||||| || | ||||  |||||||||||| |||||| | ||||||||||||||||| ||||| |    
T  7629452 ggttctaggatgtcagcaacacaagtattctcggctgcagcgtggataaagagtacacctgcattgttgcatataacagaacacgagacagtattgtcct 7629551  T
Q  174 cgtgttctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaaagg 273  Q
     |||||| || ||||  ||||| || ||||||||||| |||||||||||||||||||||| ||||||| |||||||||| ||||||  || | | |  ||    
T  7629552 tgtgttccgttatttcaagacggccagcaagaggttgaaaaaaggaaagggcagaggatagagagtgtctcagccgttggatttgggttgctacaaccgg 7629651  T
Q  274 atggtgataaagaaggccttttttattggttggataaagtagaaattggggatcccatggagttaaatcgatt 346  Q
    |||| ||||||||||||| ||||| ||||||| |  |||||||||  || ||||||||||||| |||| ||||    
T  7629652 atggcgataaagaaggccctttttgttggttgaaacaagtagaaagcggagatcccatggagtcaaatggatt 7629724  T

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Target: chr4; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 71 - 346
Target Start/End: Original strand, 7637895 - 7638170
Alignment:
Q  71 gtgggttttaggatgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgt 170  Q
    ||||||| ||||||||| |||||||||||||||| |||||| ||||| ||||||  |||||||||||| |||||| | || |||||||| ||||||||||    
T  7637895 gtgggttctaggatgtctgcaacacaagtattctctgctgcggcatggacaaagagtacacctgcattgttgcatataacggaacacgaaacagtgttgt 7637994  T
Q  171 cttcgtgttctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaa 270  Q
    ||  |||||| || ||||||||||| |||||||||||||||||||||| |||||| ||||| | ||||||| |||||||||| |||||||  | | | |     
T  7637995 ctctgtgttccgttattttgagacggccggcaagaggttggaaaaaggcaagggctgaggacagagagtgtctcagccgttggatttggttagctacaac 7638094  T
Q  271 aggatggtgataaagaaggccttttttattggttggataaagtagaaattggggatcccatggagttaaatcgatt 346  Q
     |||||| ||||||||||||| ||||| ||||||  |  ||||||| |  || ||||||||||||| |||| ||||    
T  7638095 cggatggcgataaagaaggccctttttgttggttaaaacaagtagataccggagatcccatggagtcaaatggatt 7638170  T

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Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 80 - 346
Target Start/End: Original strand, 7607073 - 7607339
Alignment:
Q  80 aggatgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgtcttcgtgtt 179  Q
    |||||||||||||||| | |||||| |||| |||| || | ||||  ||||||||||||||||||| | || ||||| |||||| ||||||||   ||||    
T  7607073 aggatgtcagcaacacgaatattctctgctacagcgtggataaagagtacacctgcattattgcatataacggaacatgagacaatgttgtctctatgtt 7607172  T
Q  180 ctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaaaggatggtg 279  Q
    | || ||||  || || ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| ||||||  ||   | |  ||||| ||    
T  7607173 ccgttatttcaaggcggccggcaagaggttggaaaaaggaaagggcagaggatagagagtgtctcaaccgttggatttgggttgcaaccaccggatgatg 7607272  T
Q  280 ataaagaaggccttttttattggttggataaagtagaaattggggatcccatggagttaaatcgatt 346  Q
    |||||||||||| ||||| ||||||| |  |||||||||  || ||||||||||||| |||| ||||    
T  7607273 ataaagaaggccctttttgttggttgaaacaagtagaaaacggagatcccatggagtcaaatggatt 7607339  T

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Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 71 - 341
Target Start/End: Complemental strand, 8935392 - 8935122
Alignment:
Q  71 gtgggttttaggatgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgt 170  Q
    ||||||| ||| |||||||||||||||||||||| || |   ||||| ||||||  |||||||||||| |||||| | || || ||||||||||| ||||    
T  8935392 gtgggttctagaatgtcagcaacacaagtattctctgatctggcatggacaaagagtacacctgcattgttgcatataacggagcacgagacagttttgt 8935293  T
Q  171 cttcgtgttctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaa 270  Q
    ||| || ||| || ||||||||||| |||||||||||||||||||||| |||||  || |||| ||||||| |||||||||| |||||||  ||| | |     
T  8935292 cttggtattccgttattttgagacggccggcaagaggttggaaaaaggcaagggttgaagatagagagtgtctcagccgttggatttggttagatacaac 8935193  T
Q  271 aggatggtgataaagaaggccttttttattggttggataaagtagaaattggggatcccatggagttaaat 341  Q
     ||||||||||||| |||||| ||||| |||||||||  ||||||  |  || ||||||||||||| ||||    
T  8935192 cggatggtgataaaaaaggccctttttgttggttggaataagtagtgaccggagatcccatggagtcaaat 8935122  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 71 - 307
Target Start/End: Complemental strand, 8934451 - 8934215
Alignment:
Q  71 gtgggttttaggatgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgt 170  Q
    ||||||| ||| |||||||||||||||||||||| || |   ||||| ||||||  |||| ||||||| |||||| | || || ||||||||||| ||||    
T  8934451 gtgggttctagaatgtcagcaacacaagtattctctgatctggcatggacaaagagtacatctgcattgttgcatataacggagcacgagacagttttgt 8934352  T
Q  171 cttcgtgttctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaa 270  Q
    ||| || ||| || ||||||||||||||| |||||||||||||||||| |||||  || |||| ||||||| | ||| |||| |||||||  ||| | |     
T  8934351 cttggtattccgttattttgagacgaccgacaagaggttggaaaaaggcaagggttgaagatagagagtgtcttagctgttggatttggttagatacaac 8934252  T
Q  271 aggatggtgataaagaaggccttttttattggttgga 307  Q
     ||||||| |||||||||||| ||||| |||||||||    
T  8934251 cggatggtaataaagaaggccctttttgttggttgga 8934215  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 8929996 - 8929902
Alignment:
Q  71 gtgggttttaggatgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagt 165  Q
    ||||||| ||| |||||||||||||||||||||| || |   ||||| ||||||  |||| ||||||| |||||| | || || |||||||||||    
T  8929996 gtgggttctagaatgtcagcaacacaagtattctctgatctggcatgaacaaagagtacaactgcattgttgcatataacggagcacgagacagt 8929902  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 6501373 - 6501505
Alignment:
Q  109 tgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgtcttcgtgttctgtaattttgagacgaccggcaagaggt 208  Q
    |||||| || ||||||  |||||||||||| |||||||| |  ||||| || ||| |||||||||||| ||| || ||||||||||| || ||||| |||    
T  6501373 tgcagcgtggacaaagagtacacctgcattgttgcatgtgatggaacatgaaacattgttgtcttcgttttccgtcattttgagacggcccgcaagtggt 6501472  T
Q  209 tggaaaaaggaaagggcagaggataaagagtgt 241  Q
    |||||||||| |||| |||||||||||||||||    
T  6501473 tggaaaaaggcaaggacagaggataaagagtgt 6501505  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 83 - 297
Target Start/End: Complemental strand, 40146668 - 40146454
Alignment:
Q  83 atgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgtcttcgtgttctg 182  Q
    |||||| | |||||||| |||| ||| |||||||| ||||||    | |||||||| |||||||| || ||||| || || |||||||| | ||| ||||    
T  40146668 atgtcacctacacaagtgttctctgccgcagcatggacaaagagcgcgcctgcattgttgcatgtgacggaacatgaaacggtgttgtccttgtgatctg 40146569  T
Q  183 taattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaaaggatggtgata 282  Q
    | ||||  ||||| || ||||| ||| ||||||||| ||||| ||| |||| ||||||||||||  |||||||||||| ||   ||| ||||||||||||    
T  40146568 ttatttctagacggcctgcaagtggtgggaaaaaggcaagggtagaagatagagagtgtttcagatgttgaatttggtttggcactagaggatggtgata 40146469  T
Q  283 aagaaggcctttttt 297  Q
    |||||| || |||||    
T  40146468 aagaagacccttttt 40146454  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 288
Target Start/End: Complemental strand, 40409613 - 40409454
Alignment:
Q  129 cacctgcattattgcatgttacagaacacgagacagtgttgtcttcgtgttctgtaattttgagacgaccggcaagaggttggaaaaaggaaagggcaga 228  Q
    |||||||||| |||||||| ||| ||||||| |  ||||||||||  || |||||  | |  ||||| || ||||| ||| ||||||||| |||||||||    
T  40409613 cacctgcattgttgcatgtgacacaacacgaaatggtgttgtctttatggtctgttctctctagacggcctgcaagtggtgggaaaaaggcaagggcaga 40409514  T
Q  229 ggataaagagtgtttcagccgttgaatttggtctgatgctaaaggatggtgataaagaag 288  Q
    ||||| ||||||||||||  |||||||||||| ||   ||| ||||||||||| ||||||    
T  40409513 ggatagagagtgtttcagatgttgaatttggtttggcactagaggatggtgatgaagaag 40409454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 285
Target Start/End: Original strand, 8103316 - 8103518
Alignment:
Q  83 atgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgtcttcgtgttctg 182  Q
    |||||| | |||||||| ||||  | || |||||| ||||||  |||||| ||||| ||||| || || |||||||| |  ||||||||||| || ||||    
T  8103316 atgtcacctacacaagtgttctcagttgtagcatggacaaagagtacaccggcattgttgcacgtgaccgaacacgacatggtgttgtcttcatggtctg 8103415  T
Q  183 taattttgagacgaccggcaagaggttggaaaaaggaaagggcagaggataaagagtgtttcagccgttgaatttggtctgatgctaaaggatggtgata 282  Q
    | ||||  ||||| || |||||  || ||||||| | ||| | ||| |||| ||| ||||| ||| || ||||||||| |||  ||| ||||||||| ||    
T  8103416 ttatttctagacggcctgcaagtagtgggaaaaaagcaagagtagatgatagagattgttttagctgtggaatttggtttgactctagaggatggtggta 8103515  T
Q  283 aag 285  Q
    |||    
T  8103516 aag 8103518  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 15190466 - 15190351
Alignment:
Q  83 atgtcagcaacacaagtattctttgctgcagcatgtacaaagtttacacctgcattattgcatgttacagaacacgagacagtgttgtcttcgtgttctg 182  Q
    ||||| |||||||| || |||| ||||   ||||| ||||||  | |||| ||||| |||||||  |  |||||||| | |||||| |||||||||||||    
T  15190466 atgtcggcaacacatgtgttctctgcttttgcatgaacaaagagtgcaccagcatttttgcatgcaagggaacacgaaatagtgttatcttcgtgttctg 15190367  T
Q  183 taattttgagacgacc 198  Q
    |||||| |||||||||    
T  15190366 taatttcgagacgacc 15190351  T

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