View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_1 (Length: 691)
Name: NF8510_low_1
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Original strand, 33081635 - 33082199
Alignment:
| Q |
1 |
caaccggcccaaaggggatgagctttgaaagcagcttccatattagcaagaaagtcttgtacggcatcactgtctctctcaggatcgggtccatgatttg |
100 |
Q |
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| T |
33081635 |
caaccggcccaaaggggatgagctttgaaagcagcttccatattagcaagaaagtcttgtacggcatcactgtctctctcaggatcgggtccatgatttg |
33081734 |
T |
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| Q |
101 |
aaaatgaaactatgaaactgtaaaattataattattgcaatgcatcagtgaattgattagggttcggattgaaattaagatggtgaaaagaagaaggaag |
200 |
Q |
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| T |
33081735 |
aaaacgaaactatgaaactgtaaaatcataattattgctatgcatcagtgaattgattagggttcggattgaaattaagatggtgaaaagaagaaggaag |
33081834 |
T |
|
| Q |
201 |
gaaccttttgatagctttgacgaaatcggcggcggcgggttggcgcatgcgctcgaggaagtcgtgtaaaccagaggaagcgtcggcgttttccattaca |
300 |
Q |
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| T |
33081835 |
gaaccttttgatagctttgacgaaatcggcggcggcgggttggcgcatgcgctcgaggaagtcgtgtaaaccagaggaagcgtcggcgttttccattaca |
33081934 |
T |
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| Q |
301 |
ctgtctgtgtaaactgttggagcttcgtctgagttgacaatgccgacacggtggtgactcgacgcgatccaacactactattacaatacgtcactttaaa |
400 |
Q |
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| T |
33081935 |
ctgtctgtgtaaactgttggagcttcgtctgagttgacaatgccgacacggtggtgactcgacgcgatccaacactactattacaatacgtcactttaaa |
33082034 |
T |
|
| Q |
401 |
cttgttatttttactttttgatgaacaatagggggcaaccccaaaatacggtggttattaaaattttactttctttttcaagatgtgttatctttgattc |
500 |
Q |
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| T |
33082035 |
cttgttatttttactttttgatcaacaatagggggcaaccccaaaatacggtggttattaaaattttactttctttttcaagatgtgttatctttgattc |
33082134 |
T |
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| Q |
501 |
atgtaattttttaggtttattgtgattgtgatgatattttcatggaatagtaacaacaattttga |
565 |
Q |
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| T |
33082135 |
atgtaattttttaggtttattgtgattgtgatgatattttcattgaatagtaacaacaattttga |
33082199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 644 - 691
Target Start/End: Original strand, 33082274 - 33082321
Alignment:
| Q |
644 |
gattaagaattgttctgctcaataatctataaactttaattatagaag |
691 |
Q |
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| T |
33082274 |
gattaaaaattgttctcctcaacaatctataaactttaattatagaag |
33082321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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