View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_11 (Length: 377)
Name: NF8510_low_11
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 7141586 - 7141950
Alignment:
| Q |
1 |
ccaaaatagatgggtatgatataccaaaaaatactacagtctttataaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7141586 |
ccaaaatagatgggtatgatataccaaaaaatactacagtctttataaatgcgtgggcaataggaagagatcctaaatattggaatgatgctgagaggtt |
7141685 |
T |
|
| Q |
101 |
tattccagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtccgggtatgacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7141686 |
tattccagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtccgggtatgacc |
7141785 |
T |
|
| Q |
201 |
tttggtttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaagtctcaggatttggatatgatag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7141786 |
tttggtttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaagtctcaggatttggatatgatag |
7141885 |
T |
|
| Q |
301 |
aagattttggactaacagttggaaggaaaaatgagttgtgtttgattccaacaatatatgatgtc |
365 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
7141886 |
aagattttggactaacagttggaaggaaaaatgagttgtgtttgattccaactgtttatgatgtc |
7141950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 6 - 349
Target Start/End: Original strand, 7154361 - 7154704
Alignment:
| Q |
6 |
atagatgggtatgatataccaaaaaatactacagtctttataaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattc |
105 |
Q |
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|||||||| ||||| |||||||||||||||| ||| | ||||||||||||||| | | ||||||||| ||||||||| ||||||||||| ||| |||| |
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| T |
7154361 |
atagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatccacaatattggactgatgctgagatgttcattc |
7154460 |
T |
|
| Q |
106 |
cagagaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtccgggtatgacctttgg |
205 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| || ||||| |||||||| || |||||||| ||||||||||| || ||| | ||||| |
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| T |
7154461 |
cagagaggtttgatggtagtttgattgatttcaaaggaaataattttgagtatattccttttggtgctggaagaagaatgtgtccaggcatgtcatttgg |
7154560 |
T |
|
| Q |
206 |
tttagcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaagtctcaggatttggatatgatagaagat |
305 |
Q |
| |
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| |||| |||||||| ||||| | ||| |||| || ||||| ||||| |||||||| |||||||||||||| || ||||||||||||||| ||| || |
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| T |
7154561 |
tatagctagtgttatgcttcctcttgctttattactatatcattttaattgggaactaccaaatcagatgaaacctgaggatttggatatgactgaaaat |
7154660 |
T |
|
| Q |
306 |
tttggactaacagttggaaggaaaaatgagttgtgtttgattcc |
349 |
Q |
| |
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||||| | ||||||||||| |||||||||||||||||||||| |
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|
| T |
7154661 |
gttggattggcagttggaagggaaaatgagttgtgtttgattcc |
7154704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 349
Target Start/End: Original strand, 7131870 - 7132210
Alignment:
| Q |
9 |
gatgggtatgatataccaaaaaatactacagtctttataaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccag |
108 |
Q |
| |
|
||||| ||||||||||||||||| |||| |||| | || |||| |||||| || | ||| |||||| ||||||||| ||||||||||| ||||| ||||| |
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| T |
7131870 |
gatggttatgatataccaaaaaagactaaagtcatgattaatgtatgggctatggcaagggatcctcaatattggactgatgctgagatgtttaatccag |
7131969 |
T |
|
| Q |
109 |
agaggtttgatgatagtttgattgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtccgggtatgacctttggttt |
208 |
Q |
| |
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|||| ||||| | ||||| |||||||| | ||| ||||| || || || ||||||| ||||| || || ||||| || || || || |||||| | |
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| T |
7131970 |
agagatttgaaggtagttctattgattttagagggaataattttgaatatcttccttttggagcaggtagaagaatttgccctggcttgcaatttggtat |
7132069 |
T |
|
| Q |
209 |
agcaagtgttatatttcctttggctctattgctctatcactttaactgggaactcccaaatcagatgaagtctcaggatttggatatgatagaagatttt |
308 |
Q |
| |
|
||| || |||| ||||| ||||| |||| || ||||| ||||| |||||||| || ||| ||||||| || |||||||||||||| ||| ||| | |
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|
| T |
7132070 |
agctggtattatgcttcctgtggctttattactttatcattttaattgggaacttcctaataagatgaaacctatggatttggatatgactgaacattat |
7132169 |
T |
|
| Q |
309 |
ggactaacagttggaaggaaaaatgagttgtgtttgattcc |
349 |
Q |
| |
|
||| | | |||||| ||||| ||| |||||||||||||| |
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| T |
7132170 |
ggattggctattggaaagaaaagtgatttgtgtttgattcc |
7132210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 193
Target Start/End: Original strand, 41305312 - 41305457
Alignment:
| Q |
48 |
aatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaata |
147 |
Q |
| |
|
||||| ||||| || ||||||||||| || |||||| ||| |||||||| |||| || |||||||||| | |||| | |||||||||||||| | |
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|
| T |
41305312 |
aatgcttgggcgattggaagagatccaaagtattgggttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacag |
41305411 |
T |
|
| Q |
148 |
acttcgagtacattcctttcggagctggaaggagaatgtgtccggg |
193 |
Q |
| |
|
|||| || ||||| || || || ||||||||||| ||||||||||| |
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|
| T |
41305412 |
actttgaatacataccatttggtgctggaaggaggatgtgtccggg |
41305457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 31177755 - 31177694
Alignment:
| Q |
129 |
attgatttcaaaggaaataacttcgagtacattcctttcggagctggaaggagaatgtgtcc |
190 |
Q |
| |
|
|||||||||||||| | ||||| |||||||| || ||||| |||||||| ||||||||||| |
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|
| T |
31177755 |
attgatttcaaaggtacaaactttgagtacataccgttcggtgctggaagaagaatgtgtcc |
31177694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 41337787 - 41337875
Alignment:
| Q |
54 |
tgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaagg |
142 |
Q |
| |
|
|||||||| ||||||||||| || |||||| ||| |||||||| |||| || |||||||||| | |||| | |||||||||||||| |
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|
| T |
41337787 |
tgggcaattggaagagatccaaagtattgggttgaagctgagagttttaaacctgagaggtttgttaatagctcaattgatttcaaagg |
41337875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 22986407 - 22986265
Alignment:
| Q |
48 |
aatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaaata |
147 |
Q |
| |
|
||||| ||||| || ||| | |||||||||||||||||||| | || | |||| ||| ||||||||| |||||||| |||||||||||||||| || |
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|
| T |
22986407 |
aatgcttgggccattggacgggatcctaaatattggaatgaccccgataagttttatcctgagaggtttattgatagttctattgatttcaaaggaacta |
22986308 |
T |
|
| Q |
148 |
acttcgagtacattcctttcggagctggaaggagaatgtgtcc |
190 |
Q |
| |
|
| || ||||||||||| || || |||||||||||||| ||||| |
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|
| T |
22986307 |
attttgagtacattccatttggtgctggaaggagaatttgtcc |
22986265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 23610350 - 23610187
Alignment:
| Q |
45 |
ataaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagtttgattgatttcaaaggaa |
144 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||| | || | |||| ||| || |||||| |||||| | ||||||||| ||||| |
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|
| T |
23610350 |
ataaatgcttgggcaataggaagggatcctaaatattggaatgacccagataagttttatcctgaaaggtttattgatagctctattgatttctcaggaa |
23610251 |
T |
|
| Q |
145 |
ataacttcgagtacattcctttcggagctggaaggagaatgtgtccgggtatgacctttggttt |
208 |
Q |
| |
|
||| || |||| |||||| || || ||||| |||||||| ||||| || |||| || |||||| |
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|
| T |
23610250 |
ctaattttgagttcattccatttggtgctggtaggagaatttgtcccggcatgaactatggttt |
23610187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 12425353 - 12425274
Alignment:
| Q |
46 |
taaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagt |
125 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||| ||||||||||| |||||| || ||||||||| |||||||| |
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|
| T |
12425353 |
taaatgcatgggcaattggaagagatcccgaacattggtctgatgctgagaagtttataccggagaggtttcatgatagt |
12425274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 12268332 - 12268409
Alignment:
| Q |
46 |
taaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgata |
123 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||| |||||| |||| |||||| || ||||||||| |||||| |
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| T |
12268332 |
taaatgcatgggcaattggaagagatcccaatcattggtctgatgcagagaagtttatacctgagaggtttcatgata |
12268409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 55955026 - 55954947
Alignment:
| Q |
46 |
taaatgcatgggcaataggaagagatcctaaatattggaatgatgctgagaggtttattccagagaggtttgatgatagt |
125 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||| ||||||| ||| |||||| || || |||||| |||||||| |
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|
| T |
55955026 |
taaatgcatgggcaattggaagagatcccaaacattggtatgatgcaaagaagtttatacctgaaaggtttaatgatagt |
55954947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 41795792 - 41795747
Alignment:
| Q |
46 |
taaatgcatgggcaataggaagagatcctaaatattggaatgatgc |
91 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
41795792 |
taaatgcatgggcaatcggaagagatcccaaatattgatatgatgc |
41795747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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