View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_14 (Length: 365)
Name: NF8510_low_14
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 3981069 - 3980730
Alignment:
| Q |
18 |
aaatacggaatgatacctactactatccctattattcatatataaaattttgatataaatgatgttcagacgataaagaaaaagacatcgacaaggcaaa |
117 |
Q |
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| T |
3981069 |
aaatacggaatgatacctactactatccctattattcatatataaaattttgatataaatgatgttcagacgataaagaaaaagacatcgacaaggcaaa |
3980970 |
T |
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| Q |
118 |
acttcaatattaatattatgcaaatgttgaaagataattgtcgtatataaattatgctcagaattttagcagtcatcagattcttcaaaatgtcctcctc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||| |
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| T |
3980969 |
acttcaatattaatattatgcaaatgttgaaagataattgtcgtatataaattatgctcagcattttagcagtcatcagattcttcaaaatg---ttctc |
3980873 |
T |
|
| Q |
218 |
atatattacgtaattacattgttagcttcttcacatctacaagtgtctatatcatgtcattgcaggca----tacgcagccacatttggacttggcatat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3980872 |
atatattacgtaattacattgttagcttcttcacatctacaagtgtctatatcatgtcattgcaggcatacgtacgcagccacatttggacttggcatat |
3980773 |
T |
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| Q |
314 |
gttatttattattgttagggcgtttattttttgtgagaattat |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3980772 |
gttatttattattgttagggcgtttattttttgtgagaattat |
3980730 |
T |
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