View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_17 (Length: 346)
Name: NF8510_low_17
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 44995122 - 44995441
Alignment:
| Q |
1 |
tttgatgaaatgcttgagtgttgtttgtgtcctgatgttactacttttaataagcttgttcatgccttgtgtaagaaaggttttgttttggaaagtgaga |
100 |
Q |
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| T |
44995122 |
tttgatgaaatgcttgagtgttgtttgtgtcctgatgttactacttttaataagcttgttcatgcgttgtgtaagaaaggttttgttttggaaagtgaga |
44995221 |
T |
|
| Q |
101 |
ggctttttgataaggttttgaagagaggggtttgtccgaatttgtttacttttaatatctttatacaaggtctttgtaaggagggttcgcttgatagggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44995222 |
ggctttttgataaggttttgaagagaggggtttgtccgaatttgtttacttttaatatctttatacaaggtctttgtaaggagggttcgcttgatagggc |
44995321 |
T |
|
| Q |
201 |
tgttagcttgttgggctgtgtttcgagggaaggattgaggccggatgttgttacgtataatacagttatatgtgggttgtgtaggaagtcacgggttgtt |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44995322 |
tgttaggttgttgggctgtgtttcgagggaaggattgaggccggatgttgttacgtataatacagttatatgtgggttgtgtaggaagtcacgggttgtt |
44995421 |
T |
|
| Q |
301 |
gaagcggaggaatgcttaca |
320 |
Q |
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|||||||||||||||||||| |
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| T |
44995422 |
gaagcggaggaatgcttaca |
44995441 |
T |
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