View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_18 (Length: 345)
Name: NF8510_low_18
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 37810028 - 37810354
Alignment:
| Q |
1 |
tcaaggactaacacatgttgggcactgacgccttcaacccaaagtatcggtgttacataacctatagctactaatttggccatatgactagtactctaaa |
100 |
Q |
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| T |
37810028 |
tcaaggactaacacac-ttgggcactgacgccttcaacccaaagtatcggtgttacataacctatagctactaatttggccatatgactagtactctaaa |
37810126 |
T |
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| Q |
101 |
cgcttctctttcaaggcatgagtcaatatatttggaataaagaagtagtgcatgtgacacaaaataatgcttgtactaagtcaaagtgttaatatacctg |
200 |
Q |
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| T |
37810127 |
cgcttctctttcaaggcatgagtcaatatatttggaataaagaagtagtgcatgtgacacaaaataatgcttgtactaagtcaaagtgttaatatacctg |
37810226 |
T |
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| Q |
201 |
tgagacgaacatgatgtataattccagaagtatagttctgaagtccttcaaaaggatatagctgactatacacaagggaataaccaacagcttggccatt |
300 |
Q |
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| T |
37810227 |
tgagacgaacatgatgtataattccagaagtatagttctgaagtccttcaaaaggatatagctgactatacacaagggaataaccaacagcttggccatt |
37810326 |
T |
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| Q |
301 |
cattgaccttccaaaccttccatattga |
328 |
Q |
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| T |
37810327 |
cattgaccttccaaaccttccatattga |
37810354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 176 - 328
Target Start/End: Original strand, 37818159 - 37818311
Alignment:
| Q |
176 |
ctaagtcaaagtgttaatatacctgtgagacgaacatgatgtataattccagaagtatagttctgaagtccttcaaaaggatatagctgactatacacaa |
275 |
Q |
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| T |
37818159 |
ctaagtcaaagtgttaatatacctgtgagacgaacatgatgtataattccagaagtgtagttctgaagtccttcgaaaggatatagctgactatacacaa |
37818258 |
T |
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| Q |
276 |
gggaataaccaacagcttggccattcattgaccttccaaaccttccatattga |
328 |
Q |
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| T |
37818259 |
gggaataaccaacagcttggacattcattgaccttccaaatcttccatattga |
37818311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 19905441 - 19905358
Alignment:
| Q |
196 |
acctgtgagacgaacatgatgtataattccagaagtatagttctgaagtccttcaaaaggatatagctgactatacacaaggga |
279 |
Q |
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| T |
19905441 |
acctgtgagccgaacatgatggatgattccagaagtgtaattctgaagaccttcaaaaggataaagctggctgtacacaaggga |
19905358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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