View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_19 (Length: 339)
Name: NF8510_low_19
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 41694349 - 41694689
Alignment:
| Q |
1 |
cagaacagaagcgtgtttcatctcgatctttctttttctacacttcttttacaacagcatannnnnnnnnnnnggtgaataagagcaccgattaccctcc |
100 |
Q |
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| T |
41694349 |
cagaacagaagcgtgtttcatctcgatctttctttttccacacttcttttacaacagcatatttttgttttttggtgaataagagcaccgattaccctcc |
41694448 |
T |
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| Q |
101 |
tattatttgttacaaaaagtagtactcctagtaaatattattactttggtcgcatatataagatggaaaaatagtctcgtcgggctgtattgagannnnn |
200 |
Q |
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| T |
41694449 |
tattatttgttacaaaaagtaatactcctagtaaatattattactttggtcgcatatataagatggaaaaatagtctcatcgggctggattgagattttt |
41694548 |
T |
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| Q |
201 |
nnnngtt--gttgggggatttggcggtacgaaatataagcaggatttaactcctttcattctttttaaaaagagtgttgctattggaagcgaaagacatt |
298 |
Q |
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| T |
41694549 |
tttttttttgttgggggatttggcggtacgaaatataagcaggatttaactaatttcattctttttaaaaagagtgttgctattggaagcgaaagacatt |
41694648 |
T |
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| Q |
299 |
atcaagaatgtgtagcaaatacatggtcaccatttgatctt |
339 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |
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| T |
41694649 |
atcaagaatgtgtagcaaatacatggccaccatttgatctt |
41694689 |
T |
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