View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8510_low_20 (Length: 337)
Name: NF8510_low_20
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 42553563 - 42553310
Alignment:
| Q |
18 |
attacaaggtagacttcataatcacgaagtctctttagaagaacactaaaaacaaaaccaatgtagacttcatcgattcaatcattttttaactaaaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42553563 |
attacaaggtagacttcataatcacgaagtctctttagaagaacactaaaaaccaaaccaatgtagacttcatcgattcaatcattttttaactaaaaac |
42553464 |
T |
|
| Q |
118 |
cattcctattgacgtttagcttcgttaagtgttttggttgaattttaagtaatacatggagtctctttagaaattacccatctcctttcaaaagtgaagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42553463 |
cattcctattgacgtttagcttcgttaagtgttttggttgaattttaagtaatacagggagtctctttagaaattacccatctccattcaaaagtgaagt |
42553364 |
T |
|
| Q |
218 |
ttattgttttgggcctctcaagcccacacgaaaaggtttcaacacaaacgccgt |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42553363 |
ttattgttttgggcctctcaagcccacacgaagaggtttcaacacaaacgccgt |
42553310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 42553291 - 42553249
Alignment:
| Q |
288 |
tcgtgccgcaaaaccacagagaaacgaagctagggttcatctc |
330 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
42553291 |
tcgtaccgcaaaaccacagggaaacgaagctagggtttatctc |
42553249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University