View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_22 (Length: 329)
Name: NF8510_low_22
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_22 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 11701963 - 11702270
Alignment:
| Q |
1 |
tgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagttctgttcgtcacttctacctattttattttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11701963 |
tgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagttctgttcgtcacttctacctattttattttttg |
11702062 |
T |
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| Q |
101 |
tctaaaatgaactacttctctcaaacgtcttgaatttttacgccatagttaatagatcatttgagtatcggtaccgttatagaatttcttttcagtgatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11702063 |
tctaaaatgaactacttctctcaaacgtcttgaatttttacgccatagttaatagttcatttgagtatcggtaccgttatagaatttcttttcagtgatt |
11702162 |
T |
|
| Q |
201 |
ccactcattttattgttctgctaccattagacaaaaaattcnnnnnnnncagccgttattaatttattttaaactaattactataaaaaagtgacatgac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11702163 |
ccactcattttattgttctgctaccattagacaaaaattctttttttttcagccgttattaatttattttaaactaattactataaaaaagtgacatgac |
11702262 |
T |
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| Q |
301 |
attaatgt |
308 |
Q |
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|||||||| |
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| T |
11702263 |
attaatgt |
11702270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 11779145 - 11779225
Alignment:
| Q |
1 |
tgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagttctgttcgtcactt |
81 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||| |||||| |
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| T |
11779145 |
tgctgattcttttcttggacgctatcacacaatcatacttgcttctcttatctatgtattggttggttctgttcttcactt |
11779225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11676070 - 11676136
Alignment:
| Q |
1 |
tgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagt |
67 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
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| T |
11676070 |
tgctgattcttttcttggacgctatcgcacaatcatactcgcttctctcatttatatcttggtcagt |
11676136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 11684349 - 11684415
Alignment:
| Q |
1 |
tgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagt |
67 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
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| T |
11684349 |
tgctgattcttttcttggacgctatcgcacaatcatactcgcttctctcatttatatcttggtcagt |
11684415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 11798007 - 11798063
Alignment:
| Q |
1 |
tgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatat |
57 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
11798007 |
tgctgattcttttcttggacgctaccgcacaatcatacttgcttctctcatctatat |
11798063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11696166 - 11696228
Alignment:
| Q |
1 |
tgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggt |
63 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| |
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| T |
11696166 |
tgctgattcttttcttggacgctaccgcacaatcatgcttgcttctctcatctatatattggt |
11696228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 16608 - 16688
Alignment:
| Q |
1 |
tgctgattcttttcttggacgctatcgcacaatcatacttgcttctcttatctatatcttggtcagttctgttcgtcactt |
81 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |
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| T |
16608 |
tgctgattcttttcttggacgctatcacacaatcatacttgcttctcttatctatatattggttggttctgttcttcactt |
16688 |
T |
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