View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_24 (Length: 309)
Name: NF8510_low_24
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 31 - 292
Target Start/End: Original strand, 1813739 - 1814001
Alignment:
| Q |
31 |
tcaaatgtagtatctggcatatgaggtataaccatctatattttagaagcatatgaaactttgttccaaaaaattagaagaaaacatgtgaatataccat |
130 |
Q |
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| T |
1813739 |
tcaaatgtagtatctggcatatgaggtataaccatctatattttagaagcatatgaaactttgttccaaaaaattagaagaaaacatgtgaatataccat |
1813838 |
T |
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| Q |
131 |
aatgttgtgtctatacacgatcaagttcaaaagtgaagctcttcaagtgttcaagaaattaaaaatcttaattgaggagtgcaaaaaagtaataaagatc |
230 |
Q |
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| T |
1813839 |
aatgttgtgtctatacacgatcaagttcaaaagtgaagctcttcaagtgttcaagaaattaaaaatcttaattgaggagtgcaaaaaagtaataaagatc |
1813938 |
T |
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| Q |
231 |
atccg-atcaacatctgattaatctttataaaaaacattcgtagtaccccatacataataact |
292 |
Q |
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| T |
1813939 |
atccgcatcaacatctgattaatctttataaaaaacattcgtagtacccaatacataataact |
1814001 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 2561966 - 2561911
Alignment:
| Q |
151 |
tcaagttcaaaagtgaagctcttcaagtgttcaagaaattaaaaatcttaattgag |
206 |
Q |
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| T |
2561966 |
tcaagttcaaaagtgaagctcttaaaatgttcaaaaggttcaaaatcttaattgag |
2561911 |
T |
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