View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8510_low_28 (Length: 289)

Name: NF8510_low_28
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8510_low_28
NF8510_low_28
[»] chr6 (9 HSPs)
chr6 (20-267)||(6436683-6436931)
chr6 (20-274)||(6432596-6432853)
chr6 (20-118)||(6403500-6403598)
chr6 (67-274)||(7993629-7993836)
chr6 (219-275)||(8913668-8913724)
chr6 (69-116)||(10579180-10579227)
chr6 (83-115)||(6427109-6427141)
chr6 (69-112)||(6596317-6596360)
chr6 (153-272)||(6403328-6403450)
[»] chr1 (7 HSPs)
chr1 (69-115)||(30827723-30827769)
chr1 (73-272)||(33160954-33161165)
chr1 (175-272)||(29658508-29658605)
chr1 (219-272)||(29691067-29691120)
chr1 (219-272)||(29718579-29718632)
chr1 (69-114)||(7555124-7555169)
chr1 (230-274)||(19468115-19468159)
[»] chr5 (2 HSPs)
chr5 (66-111)||(17205662-17205707)
chr5 (221-274)||(38267154-38267207)
[»] chr4 (4 HSPs)
chr4 (153-193)||(55908258-55908298)
chr4 (72-109)||(10633967-10634004)
chr4 (231-274)||(55908336-55908379)
chr4 (206-275)||(53761371-53761440)
[»] chr2 (2 HSPs)
chr2 (153-193)||(1037194-1037234)
chr2 (231-274)||(1037272-1037315)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 6436931 - 6436683
Alignment:
Q  20 ttgacctctcttaatgcttccgacattcaatctcttaaaagctctcacctgttactcattgccgattgtttccctttgctcaaacaactcaacctcggta 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6436931 ttgacctctcttaatgcttccgacattcattctcttaaaagctctcacctgttactcattgccgattgtttccctttgctcaaacaactcaacctcggta 6436832  T
Q  120 aaactttgagcaacaatcacacttatgcaattcactctttgttatccaagtgtc-gtatacaacatttggatcttgatcgtagttactttctgaagaata 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6436831 aaactttgagcaacaatcacacttatgcaattcactctttgttatccaagtgtcagtatacaacatttggatcttgatcgtagttactttctgaagaata 6436732  T
Q  219 aacatgttgccaagttgtctttcttccttgctgatttggtgtctataaa 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6436731 aacatgttgccaagttgtctttcttccttgctgatttggtgtctataaa 6436683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 6432853 - 6432596
Alignment:
Q  20 ttgacctctcttaatgcttccgacattcaatctcttaaaagctctcacctgttactcattgccgattgtttccctttgctcaaacaactcaacctcggta 119  Q
    ||||||||||| |||  |||| ||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||     
T  6432853 ttgacctctctcaattgttcccacattcattctcttaatagctctcacctcttactcattgccgattgtttccctttgctcaaacaactcaaccttggtc 6432754  T
Q  120 aaactttgagcaacaatcacacttatgcaattcactctttgttatccaagtgtcg---tatacaacatttggatcttgatcgtagttactttctgaagaa 216  Q
    | ||||| | | ||||||||||| ||||| |||| ||| | |||||||||||| |   |||||||||||||||||||  | |   | | ||||| ||  |    
T  6432753 acacttttatccacaatcacactaatgcatttcaatctctattatccaagtgtagatatatacaacatttggatctttgtggacttcattttctaaatga 6432654  T
Q  217 taaacatgttgccaagttgtctttcttccttgctgatttggtgtctataaaccttagt 274  Q
    | |||||||||||  || |||||| || ||||||||||||||||||||||||||||||    
T  6432653 tcaacatgttgccgggtcgtctttgtttcttgctgatttggtgtctataaaccttagt 6432596  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 6403598 - 6403500
Alignment:
Q  20 ttgacctctcttaatgcttccgacattcaatctcttaaaagctctcacctgttactcattgccgattgtttccctttgctcaaacaactcaacctcggt 118  Q
    |||||||||||| ||  |||||||||| | |||||||| |||||||| || ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  6403598 ttgacctctcttgattgttccgacattgattctcttaatagctctcatctcttactcattgccgattgtttccctaagctcaaacaactcaacctcggt 6403500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 274
Target Start/End: Original strand, 7993629 - 7993836
Alignment:
Q  67 cctgttactcattgccgattgtttccctttgctcaaacaactcaacctcggtaaaactttgagcaacaatcacacttatgcaattcactctttgttatcc 166  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||   ||  ||| ||  |   ||| | ||| | |||||| |||||| |||    
T  7993629 cctgttactcattgccaattgtttccctttgctcaaagaactcaacctcggt--cacaatga-cactagctacattaatgaatttcactatttgttgtcc 7993725  T
Q  167 aagtgtc---gtatacaacatttggatcttgatcgtagttactttctgaagaataaacatgttgccaagttgtctttcttccttgctgatttggtgtcta 263  Q
    |||||||   ||||||||||||| |||||| || ||| ||| ||||||||  ||  |||||||||  ||||||| ||  | |||| ||||||||||||||    
T  7993726 aagtgtcgatgtatacaacatttagatcttaatggtatttattttctgaatgatctacatgttgctgagttgtcattacttcttggtgatttggtgtcta 7993825  T
Q  264 taaaccttagt 274  Q
    |||||||||||    
T  7993826 taaaccttagt 7993836  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 8913668 - 8913724
Alignment:
Q  219 aacatgttgccaagttgtctttcttccttgctgatttggtgtctataaaccttagtc 275  Q
    ||||||||| |||||||||||| || |||| | ||||||||||||||||||||||||    
T  8913668 aacatgttgtcaagttgtctttgtttcttggtaatttggtgtctataaaccttagtc 8913724  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 10579180 - 10579227
Alignment:
Q  69 tgttactcattgccgattgtttccctttgctcaaacaactcaacctcg 116  Q
    |||||||| |||||||||||||||| ||||||||| ||||||||||||    
T  10579180 tgttactcgttgccgattgtttcccattgctcaaagaactcaacctcg 10579227  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 6427141 - 6427109
Alignment:
Q  83 gattgtttccctttgctcaaacaactcaacctc 115  Q
    |||||||||||||||||||||||||||||||||    
T  6427141 gattgtttccctttgctcaaacaactcaacctc 6427109  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 6596317 - 6596360
Alignment:
Q  69 tgttactcattgccgattgtttccctttgctcaaacaactcaac 112  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||||    
T  6596317 tgttactcattgctgattgtttcccattgctcaaagaactcaac 6596360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 272
Target Start/End: Complemental strand, 6403450 - 6403328
Alignment:
Q  153 actctttgttatccaagtgtcg---tatacaacatttggatcttgatcgtagttactttctgaagaataaacatgttgccaagttgtctttcttccttgc 249  Q
    ||||| |||||||||||||| |   ||||||||||||||||||| ||   ||||| ||||||||  ||  |||||||||  |||| ||||| || ||       
T  6403450 actctctgttatccaagtgtagatgtatacaacatttggatcttaataacagttattttctgaatgatttacatgttgctgagttttctttgtttctaca 6403351  T
Q  250 tgatttggtgtctataaacctta 272  Q
    ||| |||||||||||||||||||    
T  6403350 tgagttggtgtctataaacctta 6403328  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 30827769 - 30827723
Alignment:
Q  69 tgttactcattgccgattgtttccctttgctcaaacaactcaacctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30827769 tgttactcattgccgattgtttccctttgctcaaacaactcaacctc 30827723  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 272
Target Start/End: Complemental strand, 33161165 - 33160954
Alignment:
Q  73 actcattgccgattgtttccctttgctcaaacaactcaacctcggtaaaactttgagcaacaatcacactta---------tgcaattcactctttgtta 163  Q
    |||| |||||||||||||||||||||||||| |||||||||||||| |  ||  |  ||||||||||||| |         || | |||||||| | |||    
T  33161165 actcgttgccgattgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctctta 33161066  T
Q  164 tccaagtgtcg---tatacaacatttggatcttgatcgtagttactttctgaagaataaacatgttgccaagttgtctttcttccttgctgatttggtgt 260  Q
    ||||| ||||    ||||||| ||||||||||  |||  | ||| ||||||||  || ||||||||||| |||| ||||| || ||||||| ||||||||    
T  33161065 tccaactgtcaatatatacaatatttggatctaaatcacacttattttctgaatgatcaacatgttgccgagttctctttgtttcttgctgctttggtgt 33160966  T
Q  261 ctataaacctta 272  Q
    ||||||||||||    
T  33160965 ctataaacctta 33160954  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 272
Target Start/End: Original strand, 29658508 - 29658605
Alignment:
Q  175 tatacaacatttggatcttgatcgtagttactttctgaagaataaacatgttgccaagttgtctttcttccttgctgatttggtgtctataaacctta 272  Q
    |||||||||||||||||||  ||| | | | ||||| ||  || ||||||||||| |||| ||||| || |||||| |||||||||||||||||||||    
T  29658508 tatacaacatttggatcttagtcgcactaagtttctcaatgatcaacatgttgccgagttctctttgtttcttgctcatttggtgtctataaacctta 29658605  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 29691067 - 29691120
Alignment:
Q  219 aacatgttgccaagttgtctttcttccttgctgatttggtgtctataaacctta 272  Q
    ||||||||||| |||| ||||| || |||||| |||||||||||||||||||||    
T  29691067 aacatgttgccgagttctctttgtttcttgctcatttggtgtctataaacctta 29691120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 29718579 - 29718632
Alignment:
Q  219 aacatgttgccaagttgtctttcttccttgctgatttggtgtctataaacctta 272  Q
    ||||||||||| |||| ||||| || |||||| |||||||||||||||||||||    
T  29718579 aacatgttgccgagttctctttgtttcttgctcatttggtgtctataaacctta 29718632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 7555169 - 7555124
Alignment:
Q  69 tgttactcattgccgattgtttccctttgctcaaacaactcaacct 114  Q
    ||||||||||||| || ||||||||||||||| || ||||||||||    
T  7555169 tgttactcattgctgaatgtttccctttgctcgaagaactcaacct 7555124  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 19468115 - 19468159
Alignment:
Q  230 aagttgtctttcttccttgctgatttggtgtctataaaccttagt 274  Q
    ||||||||||| || |||| |||||| ||||||||||||||||||    
T  19468115 aagttgtctttgtttcttggtgatttagtgtctataaaccttagt 19468159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 17205707 - 17205662
Alignment:
Q  66 acctgttactcattgccgattgtttccctttgctcaaacaactcaa 111  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  17205707 acctgttactcattgccgattgtttccctttgctcaaagaactcaa 17205662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 38267154 - 38267207
Alignment:
Q  221 catgttgccaagttgtctttcttccttgctgatttggtgtctataaaccttagt 274  Q
    ||||||||| |||||||||| || ||| || || ||||||||||||||||||||    
T  38267154 catgttgccgagttgtctttgtttcttcctcatctggtgtctataaaccttagt 38267207  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 55908258 - 55908298
Alignment:
Q  153 actctttgttatccaagtgtcgtatacaacatttggatctt 193  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  55908258 actctttgttatccaagtgtcgtatacaacatttggatctt 55908298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 10633967 - 10634004
Alignment:
Q  72 tactcattgccgattgtttccctttgctcaaacaactc 109  Q
    |||||||||||||||||||||||||||||||| |||||    
T  10633967 tactcattgccgattgtttccctttgctcaaagaactc 10634004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 55908336 - 55908379
Alignment:
Q  231 agttgtctttcttccttgctgatttggtgtctataaaccttagt 274  Q
    |||||||||| || |||| |||||||||||||||||||||||||    
T  55908336 agttgtctttgtttcttggtgatttggtgtctataaaccttagt 55908379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 53761371 - 53761440
Alignment:
Q  206 tttctgaagaataaacatgttgccaagttgtctttcttccttgctgatttggtgtctataaaccttagtc 275  Q
    |||||||| ||| |||||||||  || ||||||||  | |||| |||||||||||| |||||||||||||    
T  53761371 tttctgaacaatcaacatgttgtaaatttgtctttgcttcttggtgatttggtgtccataaaccttagtc 53761440  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 1037194 - 1037234
Alignment:
Q  153 actctttgttatccaagtgtcgtatacaacatttggatctt 193  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1037194 actctttgttatccaagtgtcgtatacaacatttggatctt 1037234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 1037272 - 1037315
Alignment:
Q  231 agttgtctttcttccttgctgatttggtgtctataaaccttagt 274  Q
    |||||||||| || |||| |||||||||||||||||||||||||    
T  1037272 agttgtctttgtttcttggtgatttggtgtctataaaccttagt 1037315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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