View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_29 (Length: 285)
Name: NF8510_low_29
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 31 - 267
Target Start/End: Original strand, 45597063 - 45597299
Alignment:
| Q |
31 |
tccttgaagctatggaaatacatctgaaattgacaactctgtaacagtactataatttttacaagtttatcgtttatcaagcttagggcatagttgttaa |
130 |
Q |
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| T |
45597063 |
tccttgaagctatggaaatacatatgaaattgacaactctataacagtactataatttttacaagtttatcgtttattaagcttagggcatagttgttaa |
45597162 |
T |
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| Q |
131 |
agacgttttggtgagaaaatatggaatatggagtgaagaaatcaaagagttagctagtgcctaacttgcatcgtgggctatgaacctcgcatcgtgagaa |
230 |
Q |
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| T |
45597163 |
agacgttttggtgagaaaatatggaatatggagtgaagaaatcaaagaggcagctagtgcctaacttgcatcgcgggctatgaacctcgcatcgtgagaa |
45597262 |
T |
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| Q |
231 |
tataatgcaaatcaaggagaagctctcgacacaacat |
267 |
Q |
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| T |
45597263 |
tataatgcaaatcaaggagaagctctcgacacaacat |
45597299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 242
Target Start/End: Complemental strand, 26808107 - 26807951
Alignment:
| Q |
86 |
tttttacaagtttatcgtttatcaagcttagggcatagttgttaaagacgttttggtgagaaaatatggaatatggagtgaagaaatcaaagagttagct |
185 |
Q |
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| T |
26808107 |
tttttacaagtttataattgatcaagattgtggcatagctgttacagacgttctagtgagaagaaatggagcaaggattgaagaaaccaaggagtcagct |
26808008 |
T |
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| Q |
186 |
agtgcctaacttgcatcgtgggctatgaacctcgcatcgtgagaatataatgcaaat |
242 |
Q |
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| T |
26808007 |
actgtctatctcgcatcgcgagatatgagccccacatcgtgagaatatgatggaaat |
26807951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 15048411 - 15048576
Alignment:
| Q |
86 |
tttttacaagtttatcgtttatcaagcttagggcatagttgttaaagacgttttggtgagaaaatatggaatatggagtgaagaaatcaaagagttagct |
185 |
Q |
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|||||||||||||||| || || ||| || ||| ||||| |||| ||| || | |||||| || ||||| | | |||||||||||||| |||| ||| |
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| T |
15048411 |
tttttacaagtttatcattaattaagtttggggaatagtcgttacggacattctagtgagagaaaatggagcaagaagtgaagaaatcaaggagtcggct |
15048510 |
T |
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| Q |
186 |
agtgcctaacttgcatcgtgggctatgaacctcgcatcgtgagaatataatgcaaatcaaggagaa |
251 |
Q |
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| T |
15048511 |
actttctaccttgcatcgtgggctacgattcccgcatcgtgcgaatacgatggaaatctaggagaa |
15048576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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