View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8510_low_3 (Length: 507)

Name: NF8510_low_3
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8510_low_3
NF8510_low_3
[»] chr3 (1 HSPs)
chr3 (1-492)||(20598604-20599095)
[»] chr6 (3 HSPs)
chr6 (1-492)||(8699893-8700384)
chr6 (205-411)||(21774510-21774716)
chr6 (355-492)||(11388261-11388398)
[»] chr5 (3 HSPs)
chr5 (205-492)||(23333327-23333614)
chr5 (336-410)||(24508481-24508555)
chr5 (355-492)||(21790936-21791073)
[»] chr4 (1 HSPs)
chr4 (205-492)||(20624891-20625178)
[»] chr2 (2 HSPs)
chr2 (315-492)||(25559803-25559980)
chr2 (315-492)||(40557428-40557605)
[»] chr7 (1 HSPs)
chr7 (354-491)||(35663793-35663930)


Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 20598604 - 20599095
Alignment:
Q  1 caagactaggcataattgaaaattgattcaaaatacagagacattcatttcataattgagccttgattcattcattcataatcaacattacagagacata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||    
T  20598604 caagactaggcataattgaaaattgattcaaaatacagagacattcatttcataattgagccttgattcattcattcataattaacaatacaaagacata 20598703  T
Q  101 attcattgatacaacaagactttgaaagccaaaatgctacaatctaatattcaacctatttcaagtaaatattactccaactgctactaacattgcacct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20598704 attcattgatacaacaagactttgaaagccaaaatgctacaatctaatattcaacctatttcaagtaaatattgctccaactgctactaacattgcacct 20598803  T
Q  201 aagaattgttcctaatactaggcaaacaccaaaacagcataatccaaaaatcagacaaattttcaaccaaaatcttgtcttctcaagcacagtcttcaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20598804 aagaattgttcctaatactaggcaaacaccaaaacagcataatccaaaaatcagagaaattttcaaccaaaatcttgtcttctcaagcacagtcttcaac 20598903  T
Q  301 ttctgaannnnnnnctccaatttcgcaatcttaatatccctttcatcaatgaactcttcatcaactaacttgaaaaaactacagcctttgtcgtactgat 400  Q
    |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20598904 ttctgaatttttttctccaatttcgcaatcttaatatccctttcatcaatgaactcttcatcaactaacttgaaaaaactacagcctttgtcgtactgat 20599003  T
Q  401 ttttgtagtttctacaaccctagaacttttttccacaatttggattctgactatcagtaacagttcgaacaacagtatcttcaccacacctg 492  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20599004 ttttgtagtttctacaaccccataacttttttccacaatttggattctgactatcagtaacagttcgaacaacaatatcttcaccacacctg 20599095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 8699893 - 8700384
Alignment:
Q  1 caagactaggcataattgaaaattgattcaaaatacagagacattcatttcataattgagccttgattcattcattcataatcaacattacagagacata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||    
T  8699893 caagactaggcataattgaaaattgattcaaaatacagagacattcatttcataattgagccttgattcattcattcataattaacaatacaaagacata 8699992  T
Q  101 attcattgatacaacaagactttgaaagccaaaatgctacaatctaatattcaacctatttcaagtaaatattactccaactgctactaacattgcacct 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  8699993 attcattaatacaacaagactttgaaagccaaaatgctacaatctaatattcaacctatttcaagtaaatattgctccaactgctactaacattgcagct 8700092  T
Q  201 aagaattgttcctaatactaggcaaacaccaaaacagcataatccaaaaatcagacaaattttcaaccaaaatcttgtcttctcaagcacagtcttcaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  8700093 aagaattgttcctaatactaggcaaacaccaaaacagcataatccaaaaatcagagaaattttcaaccaaaatcttgtcttctcaagcactgtcttcaac 8700192  T
Q  301 ttctgaannnnnnnctccaatttcgcaatcttaatatccctttcatcaatgaactcttcatcaactaacttgaaaaaactacagcctttgtcgtactgat 400  Q
    ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8700193 ttctgattttttttctccaatttcgcaatcttaatatccctttcatcaatgaactcttcatcaactaacttgaaaaaactacagcctttgtcgtactgat 8700292  T
Q  401 ttttgtagtttctacaaccctagaacttttttccacaatttggattctgactatcagtaacagttcgaacaacagtatcttcaccacacctg 492  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8700293 ttttgtagtttctacatccccagaacttttttccacaatttggattctgactatcagtaacagttcgaacaacagtatcttcaccacacctg 8700384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 411
Target Start/End: Complemental strand, 21774716 - 21774510
Alignment:
Q  205 attgttcctaatactaggcaaacaccaaaacagcataatccaaaaatcagacaaattttcaaccaaaatcttgtcttctcaagcacagtcttcaacttct 304  Q
    ||||||||||| |||| |||||||||||| ||  |||| |||| ||||||| |  | ||||||||||||||||||||| | |   || ||||||||||      
T  21774716 attgttcctaacactaagcaaacaccaaaccaaaataaaccaacaatcagagacgtcttcaaccaaaatcttgtcttccccaattcattcttcaactttg 21774617  T
Q  305 gaannnnnnnctccaatttcgcaatcttaatatccctttcatcaatgaactcttcatcaactaacttgaaaaaactacagcctttgtcgtactgattttt 404  Q
     |        |||||| || ||||| || | |||||| |||||| ||||||||||||||||||||||||| |||||||| || |||||  | ||||||||    
T  21774616 tattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatcaactaacttgaagaaactacaacccttgtcaaattgattttt 21774517  T
Q  405 gtagttt 411  Q
    |||||||    
T  21774516 gtagttt 21774510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 492
Target Start/End: Original strand, 11388261 - 11388398
Alignment:
Q  355 tcttcatcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacaaccctagaacttttttccacaatttggattctgactat 454  Q
    ||||||||||||||||| ||  |||| || ||||||||   |  |||| | ||||||||||| ||| | || || || |||||||||||||||     ||    
T  11388261 tcttcatcaactaacttaaagtaactgcatcctttgtcaatcgaatttctatagtttctacagccccaaaatttcttcccacaatttggattcaatgaat 11388360  T
Q  455 cagtaacagttcgaacaacagtatcttcaccacacctg 492  Q
    |||| |||||||||||||||  || |||||||||||||    
T  11388361 cagttacagttcgaacaacaacattttcaccacacctg 11388398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 205 - 492
Target Start/End: Original strand, 23333327 - 23333614
Alignment:
Q  205 attgttcctaatactaggcaaacaccaaaacagcataatccaaaaatcagacaaattttcaaccaaaatcttgtcttctcaagcacagtcttcaacttct 304  Q
    ||||||||||| |||| |||||||||||| ||  ||||||||| ||||||| | || ||||||||||||||||||||| | |   || ||||||||||      
T  23333327 attgttcctaacactaagcaaacaccaaaccaaaataatccaacaatcagagacatcttcaaccaaaatcttgtcttccccaattcattcttcaactttg 23333426  T
Q  305 gaannnnnnnctccaatttcgcaatcttaatatccctttcatcaatgaactcttcatcaactaacttgaaaaaactacagcctttgtcgtactgattttt 404  Q
     |        |||||| || ||||| || | |||||| |||||| ||||||||||||||||||||||||| |||||||| || |||||  | ||||||||    
T  23333427 tattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatcaactaacttgaagaaactacaacccttgtcaaattgattttt 23333526  T
Q  405 gtagtttctacaaccctagaacttttttccacaatttggattctgactatcagtaacagttcgaacaacagtatcttcaccacacctg 492  Q
    ||||||||| |||||| |||||||||| ||||| ||||| || |  ||||| || |||||||||||||| |  ||||| |||||||||    
T  23333527 gtagtttctgcaaccccagaactttttcccacagtttgggttgtagctatctgtgacagttcgaacaactgattcttctccacacctg 23333614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 24508481 - 24508555
Alignment:
Q  336 atccctttcatcaatgaactcttcatcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtt 410  Q
    |||||| |||||| | | ||||||||| | |||||| ||||||||||| ||||| || || ||||||||||||||    
T  24508481 atccctctcatcagtaagctcttcatccagtaacttaaaaaaactacaacctttatcatagtgatttttgtagtt 24508555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 492
Target Start/End: Complemental strand, 21791073 - 21790936
Alignment:
Q  355 tcttcatcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacaaccctagaacttttttccacaatttggattctgactat 454  Q
    ||||||||||||||||| ||  |||| || ||||||||   |  |||| | ||||||||||| ||| | || || || |||||||||||||||     ||    
T  21791073 tcttcatcaactaacttaaagtaactgcatcctttgtcaatcgaatttctatagtttctacagccccaaaatttcttcccacaatttggattcaatgaat 21790974  T
Q  455 cagtaacagttcgaacaacagtatcttcaccacacctg 492  Q
    |||| |||||||||||||||  || |||||||||||||    
T  21790973 cagttacagttcgaacaacaacattttcaccacacctg 21790936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 205 - 492
Target Start/End: Original strand, 20624891 - 20625178
Alignment:
Q  205 attgttcctaatactaggcaaacaccaaaacagcataatccaaaaatcagacaaattttcaaccaaaatcttgtcttctcaagcacagtcttcaacttct 304  Q
    ||||||||||| |||| |||||||||||| ||  |||| |||| ||||||| | || ||||||||||||||||||||| | |   || ||||||||||      
T  20624891 attgttcctaacactaagcaaacaccaaaccaaaataaaccaacaatcagagacatcttcaaccaaaatcttgtcttccccaattcattcttcaactttg 20624990  T
Q  305 gaannnnnnnctccaatttcgcaatcttaatatccctttcatcaatgaactcttcatcaactaacttgaaaaaactacagcctttgtcgtactgattttt 404  Q
     |        |||||| || ||||| || | |||||| |||||| ||||||||||||||||||||||||| |||||||| || |||||  | ||||||||    
T  20624991 tattctttttctccaactttgcaattttcaaatccctatcatcagtgaactcttcatcaactaacttgaagaaactacaacccttgtcaaattgattttt 20625090  T
Q  405 gtagtttctacaaccctagaacttttttccacaatttggattctgactatcagtaacagttcgaacaacagtatcttcaccacacctg 492  Q
    ||||||||| |||||| | |||||||| ||||| |||||||| |  ||||| || |||||||||||||| |  ||||| |||||||||    
T  20625091 gtagtttctgcaaccccaaaactttttcccacagtttggattgtagctatctgtgacagttcgaacaactgattcttctccacacctg 20625178  T

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Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 315 - 492
Target Start/End: Complemental strand, 25559980 - 25559803
Alignment:
Q  315 ctccaatttcgcaatcttaatatccctttcatcaatgaactcttcatcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttcta 414  Q
    |||||| || |||||||| | |||| | ||||||   ||||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||     
T  25559980 ctccaactttgcaatcttcaaatccttgtcatcacataactcttcatcaactaacttgaagaaactacaacccttgtcatattgatttttgtagtttctg 25559881  T
Q  415 caaccctagaacttttttccacaatttggattctgactatcagtaacagttcgaacaacagtatcttcaccacacctg 492  Q
    |||||| |||||||||||||||| |||||||| |   |||| |||||||||| |||||| || ||||| |||||||||    
T  25559880 caacccaagaacttttttccacagtttggattgtaggtatctgtaacagttctaacaactgtttcttctccacacctg 25559803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 315 - 492
Target Start/End: Complemental strand, 40557605 - 40557428
Alignment:
Q  315 ctccaatttcgcaatcttaatatccctttcatcaatgaactcttcatcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttcta 414  Q
    |||||| || |||||||| | |||| | ||||||   ||||||||||||||||||||||| ||| |||| || ||||| || ||||||||||||||| |     
T  40557605 ctccaactttgcaatcttcaaatccttgtcatcacataactcttcatcaactaacttgaagaaaatacaacccttgtcatattgatttttgtagtttttg 40557506  T
Q  415 caaccctagaacttttttccacaatttggattctgactatcagtaacagttcgaacaacagtatcttcaccacacctg 492  Q
    |||||| |||||||||||||||| |||||||| |   |||| |||||||||| |||||  || ||||| |||||||||    
T  40557505 caacccaagaacttttttccacagtttggattgtaggtatctgtaacagttctaacaattgtttcttctccacacctg 40557428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 491
Target Start/End: Original strand, 35663793 - 35663930
Alignment:
Q  354 ctcttcatcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacaaccctagaacttttttccacaatttggattctgacta 453  Q
    ||||||||| | |||||| ||||||||||| ||||| ||  | ||||| ||||| ||| | || ||| | || ||||| ||||| |||||||||    ||    
T  35663793 ctcttcatccagtaacttaaaaaaactacaacctttatcaaagtgattcttgtaatttttgcatccccaaaattttttcccacagtttggattcgtgtta 35663892  T
Q  454 tcagtaacagttcgaacaacagtatcttcaccacacct 491  Q
    ||||||||||| ||||  || || ||||||||||||||    
T  35663893 tcagtaacagtacgaatcactgtttcttcaccacacct 35663930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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