View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_30 (Length: 272)
Name: NF8510_low_30
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 20598338 - 20598089
Alignment:
| Q |
11 |
ctaaattgccactgaccataaacaagtacttggtcattagcatcaaaatattactccagcacctaaattgtcacataacattacatgaaaatatatgcac |
110 |
Q |
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| T |
20598338 |
ctaaattgtcactgaccataaacaagttcttggtcattagcatcaaaatattaatccagcacctaaattgtcacatagcattacatgaaaatatatgcac |
20598239 |
T |
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| Q |
111 |
atagacattacatcaaaataggggcacttagaaataacttcaaaacatattggccctagcagaatcttatgaacttctaatgttgacttgaagttgaacc |
210 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20598238 |
ataggcattacatcaaaataggggcacttagaaataactgcaaaacatattggccctagcagaatcttatgaacttctaatgttgacttgaagttgaacc |
20598139 |
T |
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| Q |
211 |
cttaaccctagcagacactttcttcttcttgatgtttggttgtgttgatg |
260 |
Q |
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| T |
20598138 |
cttaaccctagcagacactttcttcttcttcatgtttggttgtgttgatg |
20598089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 20598375 - 20598327
Alignment:
| Q |
35 |
agtacttggtcattagcatcaaaatattactccagcacctaaattgtcac |
84 |
Q |
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| T |
20598375 |
agtacttggtcattagcatcaaaata-tacttaaggacctaaattgtcac |
20598327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 8699627 - 8699378
Alignment:
| Q |
11 |
ctaaattgccactgaccataaacaagtacttggtcattagcatcaaaatattactccagcacctaaattgtcacataacattacatgaaaatatatgcac |
110 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8699627 |
ctaaattgtcactgaccataaacaagttcttggtcattagcatcaaaatattaatccagcacctaaattgtcacatagcattacatgaaaatatatgcac |
8699528 |
T |
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| Q |
111 |
atagacattacatcaaaataggggcacttagaaataacttcaaaacatattggccctagcagaatcttatgaacttctaatgttgacttgaagttgaacc |
210 |
Q |
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|||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8699527 |
ataggcattacatcaaaaaaggggcacttagaaataactgcaaaacatattggccctagcagaatcttatgaacttctaatgttgacttgaagttgaacc |
8699428 |
T |
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| Q |
211 |
cttaaccctagcagacactttcttcttcttgatgtttggttgtgttgatg |
260 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
8699427 |
cttaaccctagcaaacactttcttcttcttcatgtttggttgtgttgatg |
8699378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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