View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_34 (Length: 245)
Name: NF8510_low_34
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 3679047 - 3679275
Alignment:
| Q |
1 |
gagttcttggcctctcctcttggccaagatttgaacagttccaatgtatctactggcttgcaactattttaggatttataggtttcacctcttattagag |
100 |
Q |
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| T |
3679047 |
gagttcttggtctctcttcttggccaagatttgaacagttccaatgtatctactggcttgcagctattttaggatttataggtttcacctcttattagag |
3679146 |
T |
|
| Q |
101 |
aacaatataagaggcgagggccgaaatcaaaggataatgatatttgtacgaagagtattcatcaaaaacgcatcacgaattgatttggcagcaagtgatt |
200 |
Q |
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| T |
3679147 |
aacaatataagaggcgagggccgaaatcaaaggataatgatatttgtacgaagagtattcataaaaaacgcatcacgaattgatttggcagcaagtgatt |
3679246 |
T |
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| Q |
201 |
ggtttcttataacacatacacgctgtgat |
229 |
Q |
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| T |
3679247 |
ggtttcttataacacatacacgctgtgat |
3679275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 3693578 - 3693805
Alignment:
| Q |
3 |
gttcttggcctctcctcttggccaa-gatttgaacagttccaatgtatctactggcttgcaactattttaggatttataggtttcacctcttattagaga |
101 |
Q |
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| T |
3693578 |
gttcttggcctctcctcttggccaaagatgtgaacagttccaatatatctactggcttgcagctactttaggatttataggtttgacctcttattagaga |
3693677 |
T |
|
| Q |
102 |
acaatataagaggcgagggccgaaatcaaaggataatgatatttgtacgaagagtattcatcaaaaacgcatcacgaattgatttggcagcaagtgattg |
201 |
Q |
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| T |
3693678 |
acaatataagacgcgagggccgaaattaaaggataatgatatttctacgaagaatattgatcaataacgcatcacgaactgatttggcagtaagtgattg |
3693777 |
T |
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| Q |
202 |
gtttcttataacacatacacgctgtgat |
229 |
Q |
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| T |
3693778 |
gtttcttataacacatacacactgtgat |
3693805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 3685817 - 3686038
Alignment:
| Q |
8 |
tggcctctcctcttggccaagatttgaacagttccaatgtatctactggcttgcaactattttaggatttataggtttcacctcttattagagaacaata |
107 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||| |
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| T |
3685817 |
tggcctctcctcttggccaagatttgaacagttccaaaatatccactggcttgcagctagtttaggatttatatgttggacctcttattagagaacaata |
3685916 |
T |
|
| Q |
108 |
taagaggcgagggccgaaatcaaaggataatgatatttgta-cgaagagtattcatcaaaaacgcatcacgaattgatttggcagcaagtgattggtttc |
206 |
Q |
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||||||| ||||||||||| |||||||||||||||||| | |||||| ||| |||| |||||||| |||| |||| |||||| |||||||||| ||| |
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| T |
3685917 |
taagaggagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattgg-ttc |
3686015 |
T |
|
| Q |
207 |
ttataacacatacacgctgtgat |
229 |
Q |
| |
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|| |||||||||||| ||||||| |
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| T |
3686016 |
ttttaacacatacacactgtgat |
3686038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 3653695 - 3653553
Alignment:
| Q |
1 |
gagttcttggcctctcctcttggccaagatttgaacagttccaatgtatctactggcttgcaactattttaggatttataggtttcacctcttattagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| || |||||||||| |||| | |||||||||||| |
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| T |
3653695 |
gagttcttggcctctcctcttggccaagatttgaacagttccaaaatatccactggcttgcagctacttaaggatttatatgtttgatctcttattagag |
3653596 |
T |
|
| Q |
101 |
aacaatataagaggcgagggccgaaatcaaaggataatgatat |
143 |
Q |
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|||||||||| ||||||||||| |||| ||||| ||||||||| |
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| T |
3653595 |
aacaatataaaaggcgagggccaaaattaaaggttaatgatat |
3653553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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