View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8510_low_35 (Length: 243)
Name: NF8510_low_35
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 39693734 - 39693974
Alignment:
| Q |
1 |
ttaatgagtggagaaattgcttttggtgttggagtccattgttgtgatgattttctttttgtttcaatagaaatgatgaagaatcaaggtcgtagatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39693734 |
ttaatgagtggagaaattgcttttggtgttggagtccattgttgtgatgattttctttctgtttcaatagaaatgatgaagaatcaaggtcgtagatttt |
39693833 |
T |
|
| Q |
101 |
agtcgcagatagtggagtgctactttttgatgtcagaccctaatgcgtggcaa--gtgagttaaaaatctcacgttatttataagtgagagtataaactc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39693834 |
agtcgcagatagtggagtgctactttttgatgtcaaaccctaatgcgtagcaagtgtgagttaaaaatctcacgttatttataagtgagagcataaactc |
39693933 |
T |
|
| Q |
199 |
aatgtcttaagattttgggttaagatatgatgtccatctca |
239 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||| |||| |
|
|
| T |
39693934 |
aatgccttaagattttgggttaagatgtggtgtccaactca |
39693974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 2336696 - 2336744
Alignment:
| Q |
191 |
ataaactcaatgtcttaagattttgggttaagatatgatgtccatctca |
239 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| || |||||| |||| |
|
|
| T |
2336696 |
ataaattcaatgccttaagattttgggttaagatgtggtgtccaactca |
2336744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 10498881 - 10498841
Alignment:
| Q |
190 |
tataaactcaatgtcttaagattttgggttaagatatgatg |
230 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10498881 |
tataaactcaatgtcttaaagttttgggttaagatatgatg |
10498841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 224
Target Start/End: Original strand, 50400019 - 50400048
Alignment:
| Q |
195 |
actcaatgtcttaagattttgggttaagat |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
50400019 |
actcaatgtcttaagattttgggttaagat |
50400048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 11307254 - 11307286
Alignment:
| Q |
200 |
atgtcttaagattttgggttaagatatgatgtc |
232 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
11307254 |
atgtcttaagattttggattaagatatgatgtc |
11307286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 7192787 - 7192835
Alignment:
| Q |
191 |
ataaactcaatgtcttaagattttgggttaagatatgatgtccatctca |
239 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||| ||||||||| |||| |
|
|
| T |
7192787 |
ataaactcaatgtcttaaggttttgagtaaagatgtgatgtccaactca |
7192835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University