View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_38 (Length: 239)
Name: NF8510_low_38
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 3654016 - 3654131
Alignment:
| Q |
105 |
gaaagtgtaaaaaatagatcaaaaactaatacacaag-cacatacaatgttgtctgccaaacatgtagcaaaatcgcagactc---cttaaaataacaag |
200 |
Q |
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| T |
3654016 |
gaaagtgcaaaaaatagatcaaaaactaatacacaagtcacatacaatgttttctcccaaacatgtaacaaaatagcagactcctgcttaaaataacaag |
3654115 |
T |
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| Q |
201 |
atcagtccaagcacca |
216 |
Q |
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| T |
3654116 |
atcagtccaagcacca |
3654131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 3651299 - 3651373
Alignment:
| Q |
142 |
cacatacaatgttgtctgccaaacatgtagcaaaatcgc--agactccttaaaataacaagatcagtccaagcac |
214 |
Q |
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| T |
3651299 |
cacatacaacgttgtctgccaaacatgttgcaaaatagcaaaaactccttaaaatagcaagatcagtccaagcac |
3651373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 3675353 - 3675287
Alignment:
| Q |
30 |
tatagttaaagaaggcttgtttttgtaactcagactatgtactattacaaatgtccctttcttgatt |
96 |
Q |
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| T |
3675353 |
tatagttgaaggaggcttgtttttctaacttagactatgtactattacaaaggtccatttcttgatt |
3675287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 3706439 - 3706342
Alignment:
| Q |
1 |
aaacctcaatgtgaaacttagt--actgtgttatagttaaagaaggcttgtttttgtaactcagactatgtactattacaaatgtccctttcttgatt |
96 |
Q |
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| T |
3706439 |
aaacctcaatgagaaacttagacgagtgtgttatagtcgatggaggcttgtttttgtaacttagactatgtactactacaaaggtccatttcttgatt |
3706342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 3651098 - 3651194
Alignment:
| Q |
1 |
aaacctcaatgtgaaacttagt--actgtgttatagttaaagaaggcttgtttttgtaactcagactatgtactattacaaatgtccctttcttgat |
95 |
Q |
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| T |
3651098 |
aaacctcaatgagaaacttagacgagtgtgttatagtcgatggaggcttgtttttgtaacttagactatgtactactacaaaggtccatttcttgat |
3651194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 3653835 - 3653906
Alignment:
| Q |
25 |
tgtgttatagttaaagaaggcttgtttttgtaactcagactatgtactattacaaatgtccctttcttgatt |
96 |
Q |
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| T |
3653835 |
tgtgttatagttgatggaagcttgtttttgtaacttagaccatgtactattacaaaggtccatttcttgatt |
3653906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 3701355 - 3701289
Alignment:
| Q |
153 |
ttgtctgccaaacatgtagcaaaatcgcagactcct---taaaataacaagatcagtccaagcacca |
216 |
Q |
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| T |
3701355 |
ttgtgtgccaaacatgtagcaaagtagcatactcctccttaaaataacaagatcagtccaagcacca |
3701289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 3675179 - 3675059
Alignment:
| Q |
107 |
aagtgtaaaaaatagatcaaaaactaatacac-aagcacatacaatgttgtctgccaaa----catgtagcaaaatcgc---agac---tccttaaaata |
195 |
Q |
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| T |
3675179 |
aagtgaaaaaaatagatcaaaaactaataaacaaatcacatacaatgctatttgccaaacatgcatgtagcaaaatagcaaaagactcttcctaaaaata |
3675080 |
T |
|
| Q |
196 |
acaagatcagtccaagcacca |
216 |
Q |
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| T |
3675079 |
acaagatcagtccaagcacca |
3675059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 218
Target Start/End: Complemental strand, 24300572 - 24300459
Alignment:
| Q |
117 |
aatagatcaaaaactaatacacaagcaca---------tacaatgttgtctgccaaacatgtagcaaaatcgcagactcc---ttaaaataacaagatca |
204 |
Q |
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| T |
24300572 |
aatagatcaaaaactaatacacaagtacacaagtcaaatacaatgctatttgccaaacatgtagcaaaatagcacactcccccttaaaataacaagatca |
24300473 |
T |
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| Q |
205 |
gtccaagcaccacc |
218 |
Q |
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| T |
24300472 |
aaccaagcaccacc |
24300459 |
T |
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