View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_4 (Length: 486)
Name: NF8510_low_4
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 28752755 - 28752334
Alignment:
| Q |
18 |
gagacactgttaaaaaaccagaatgaaagagaggaacttttgccagctgctgaaattagcccaaatttgggtttaatgcatcaagaatccaatggaaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28752755 |
gagacactgttaaaaaaccagaatgaaagagaggaacttttgccagctgctgaaattagcccaaatttgggtttaatgcatcaagaatccaatggaaatc |
28752656 |
T |
|
| Q |
118 |
tcggatcagaaccttccaaccatgtggaaaatgtgaatgagagttctcccacttctcttaccctgaaatttacaaacttggattcggttccttcaacagc |
217 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28752655 |
tcggatcagaaccttccaactatgtggaaaatgtgaatgagagttctcccacttctcttaccctgaaatttacaaacttggattcagttccttcaacagc |
28752556 |
T |
|
| Q |
218 |
ggatctcaacaagatctttggccgctttgggccgctagttgaatcaaagactgagcttctagagaggactaaccgcgctagagttgttttcaaaagacgc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28752555 |
ggatctcaacaagatctttggccgctttgggccgctagttgaatcaaagactgagcttctagagaggactaaccgtgctagagttgttttcaaaagacgc |
28752456 |
T |
|
| Q |
318 |
tgtgatgcagaaactgcttttagtagtgctggaaagtatagcatatttggaccttcactacaaagttaccgcctcaggattttgccccgtacaccaaaga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28752455 |
tgtgatgcagaaactgcttttagtagtgctggaaagtatagcatatttggaccttcactacaaagttaccgcctcaggattttgccccgtacaccaaaga |
28752356 |
T |
|
| Q |
418 |
aaggaacaggaaagcgaggcag |
439 |
Q |
| |
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| T |
28752355 |
aaggaacaggaaagcgaggcag |
28752334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 339
Target Start/End: Complemental strand, 28749641 - 28749488
Alignment:
| Q |
186 |
tttacaaacttggattcggttccttcaacagcggatctcaacaagatctttggccgctttgggccgctagttgaatcaaagactgagcttctagagagga |
285 |
Q |
| |
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||||||||||| ||||| ||| ||||||| || ||| ||||| || ||| | | |||||| || ||| |||||| |||||||| || ||| || || |
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| T |
28749641 |
tttacaaacttcgattccattcgttcaacaacgtttcttaacaatattttttgtcactttggacccctaattgaatggaagactgaactgctaccgaaga |
28749542 |
T |
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| Q |
286 |
ctaaccgcgctagagttgttttcaaaagacgctgtgatgcagaaactgctttta |
339 |
Q |
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|||| || | |||||||||||| ||||||| ||| ||||||||||||| |||| |
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| T |
28749541 |
ctaaaggcaccagagttgttttccaaagacgttgtaatgcagaaactgcattta |
28749488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 44865998 - 44866416
Alignment:
| Q |
18 |
gagacactgttaaaaaaccagaatgaaagagaggaacttttgccagctgctgaaattagcccaaatttgggtttaatgcatcaagaatccaatggaaatc |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||| |||| ||||| ||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
44865998 |
gagacactgttgaaaaaccagaatgaaagagatgaacttatgcccgctgccgaaattagccctggtttgggtttaatgcatcaagaaaccaatggaaatc |
44866097 |
T |
|
| Q |
118 |
tcggatcagaaccttccaaccatgtggaaaatgtgaatgagagttctcccacttctcttaccctgaaatttacaaacttggattcggttccttcaacagc |
217 |
Q |
| |
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| ||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||| | |
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| T |
44866098 |
ttggatcagaaccttccaaccatgtggaacatgtgaacgatagttctccaacttctcttactctgaaatttacaaacttggattcagttcctacaacaac |
44866197 |
T |
|
| Q |
218 |
ggatctcaacaagatctttggccgctttgggccgctagttgaatcaaagactgagcttctagagaggactaaccgcgctagagttgttttcaaaagacgc |
317 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||| |||||||||||||| | ||||| |||| |||||||||||| | ||||||||| || || |
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| T |
44866198 |
ggatctcaacaagatctttggccgctttgggacactaattgaatcaaagactaaacttctcgagaagactaaccgcgccaaagttgtttttgaacgatat |
44866297 |
T |
|
| Q |
318 |
tgtgatgcagaaactgcttttagtagtgctggaaagtatagcatatttggaccttcactacaaagttaccgcctcaggattttgccccgtacaccaaaga |
417 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| ||| |
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| T |
44866298 |
tgtgatgcagaaactgcttttagcagtgctggaaagtatagcatatttggaccttcattacaaagttaccgcctcaagattttgcctcgtacaccagaga |
44866397 |
T |
|
| Q |
418 |
aaggaacaggaaagcgagg |
436 |
Q |
| |
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|| | |||||||||||||| |
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| T |
44866398 |
aaagcacaggaaagcgagg |
44866416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 439
Target Start/End: Complemental strand, 19714247 - 19714015
Alignment:
| Q |
204 |
gttccttcaacagcggatctcaacaagatctttggccgctttgggccgctagttgaatcaaagactgagcttctagagaggactaaccgcgctagagttg |
303 |
Q |
| |
|
|||||||||||||| |||||||||| | || || ||||||| || || |||||||||||||||| | |||| || |||||| ||| ||||||| |
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| T |
19714247 |
gttccttcaacagctattctcaacaagcttttatgctgctttggtcccttaattgaatcaaagactgaattgctagcgaagactaatagcgtcagagttg |
19714148 |
T |
|
| Q |
304 |
ttttcaaaagacgctgtgatgcagaaactgcttttagtagtgctggaaagtatagcatatttggaccttcactacaaagttaccgcctcaggattttgcc |
403 |
Q |
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||||| | | ||| |||||||||||||||||||||| | | ||||||||| | |||||| || |||||||||| | | |||| | ||||||| |
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| T |
19714147 |
ttttcgagaaacgttgtgatgcagaaactgcttttactcatatcggaaagtatcg---ttttggatctgcactacaaagctttcatctcaaggttttgcc |
19714051 |
T |
|
| Q |
404 |
ccgtacaccaaagaaaggaacaggaaagcgaggcag |
439 |
Q |
| |
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| || ||||||||||||||| |||||||||||||| |
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| T |
19714050 |
tcataaaccaaagaaaggaaccggaaagcgaggcag |
19714015 |
T |
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