View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_6 (Length: 465)
Name: NF8510_low_6
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 455
Target Start/End: Original strand, 38088894 - 38089331
Alignment:
| Q |
16 |
caaaaacatattctcgccttcatctaatgtgatattatagttttttatgtttcaacattgcaggacaaataacaattgagattacttcactaacaatcaa |
115 |
Q |
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| T |
38088894 |
caaaaacatattctcgccttcatctaatgtgatattatagtttttt--gtttcaacattgcaggacaaataacaattgagattacttcactaacaatcaa |
38088991 |
T |
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| Q |
116 |
ccaaattgggacgcgcgaccataataataatttagtgcatgttgtattgatattgatactagtagaatcacggctccatcgtaattttgttaagatcgtg |
215 |
Q |
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| T |
38088992 |
ccaaattgggacgcgcgaccataataataatttagtgtatgttgtattgatattgatactcgtagaatcacggctccatcgtaattttgttaaggtcgtg |
38089091 |
T |
|
| Q |
216 |
ttaatttaaacatacacttaaaatctagaatgctggttcttgttctttttcaaaaaagacaataaggtatcttaattaccctcatgatcttggaagcttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38089092 |
ttaatttaaacatacacttaaaatctagaatgctggttcttgttctttttcaaaaaagacaataaggtatcttaattaccctcatgatcttggaagcttt |
38089191 |
T |
|
| Q |
316 |
gtctggaccataaccatttgtaatttggtattctccttttagaatggtgtcagtcaaaacagtcattttgaaaacagaagggtcactgtcctcccaactg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38089192 |
gtctggaccataaccatttgtaatttggtattctccttttagaatggtgtcagtcaaaacagtcattttgaaaacagaagggtcactgtcctcccaactg |
38089291 |
T |
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| Q |
416 |
gattcttcataaactgtttttatactcacttgagtctctg |
455 |
Q |
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| T |
38089292 |
gattcttcataaactgtttttgtactcacttgagtctctg |
38089331 |
T |
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