View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8510_low_7 (Length: 439)
Name: NF8510_low_7
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 1904718 - 1904366
Alignment:
| Q |
18 |
aagaaaaccatttcaacaattgtatatctaatagaacatttgataagcatcaacctaagtgtctacgcgtgtccggcacactattctagcaggaagagca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1904718 |
aagaaaaccatttcaacaattgtatatctaatagaacatttgataagcatcaacctaggtgtctgcgcgtgtccggcacactattctagcaggaagagca |
1904619 |
T |
|
| Q |
118 |
tgcctaaagagtaaagtgtgcatgataagcattgatgagaaaattaacagtttcacacaaatctattgttcgttatccaaattgtgtaattgcaannnnn |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1904618 |
tgcctaaagagtaaagtgtgcatgataagcattgatgagaaaattaacagtttcacacaaatctattgttcgttatccaaattgtgtaattgcaa----a |
1904523 |
T |
|
| Q |
218 |
nnnnnnnnnnnnnttaatttttctcattaagctgatgcacttcacactattgtgcttcctccacgttagaaaagtatgatcctgcccgagagttagatct |
317 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1904522 |
tatatatataaatttaatttttctcattaagctgatgtacttcacactattgtgcttcctccacgttagaaaagtatgatcctgcccgagagttagatct |
1904423 |
T |
|
| Q |
318 |
atgcatgtttaataaatccaagtctttttatgcactgcaatcatattctcaaattcg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1904422 |
atgcatgtttaataaatccaagtctttttatgcactgcaatcatattctcaaattcg |
1904366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 308 - 374
Target Start/End: Complemental strand, 18156394 - 18156328
Alignment:
| Q |
308 |
agttagatctatgcatgtttaataaatccaagtctttttatgcactgcaatcatattctcaaattcg |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18156394 |
agttagatctatgcatgtttaataaatccaagtctttttatgcactgcaatcatattctcaaattcg |
18156328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University