View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8510_low_9 (Length: 422)
Name: NF8510_low_9
Description: NF8510
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8510_low_9 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 49675758 - 49676176
Alignment:
| Q |
1 |
gagataaacttggcaaatttagccgtacggaagattcaaaaaagtaaaatccatgagcttgtggatccttcccttggctttgagtcagataaggatgtta |
100 |
Q |
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| T |
49675758 |
gagataaacttggcaaatttagccatacggaagattcaaaaaagtaaaatccatgagcttgtggatccttcccttggctttgagtcagataaggatgtta |
49675857 |
T |
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| Q |
101 |
aaaggaaaatagtttcgatagcagagttggcttttcagtgtttgcagcgggataaggaattgaggccctcaatggatgaggttttggacgtgctgaggag |
200 |
Q |
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| T |
49675858 |
aaaggaaaatagttttgatagcagagttggcttttcagtgtttgcagcgggataaggaattgaggccctcaatggatgaggttttggacgtgctgaggag |
49675957 |
T |
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| Q |
201 |
aattgatagtgttagtgggagggatgagtttggaaatgtagaggaagtaatagctcgtggagcagtgatgtcgagtattaacgtacgttcactgtcatcg |
300 |
Q |
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| T |
49675958 |
aattgatagtgttagtgggagggatgagtttggaaatgtagaggaagtaatagctcgtggagcagtgatgtcgagtattaacgtatgttcactgtcatcg |
49676057 |
T |
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| Q |
301 |
tcttcacccgatcacgttgagatgaaattgttgaagaataaaaaattaacgcctactcctacgggtgtgacagataaatgggatagtgaatcgactactt |
400 |
Q |
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| T |
49676058 |
tcctcacccgatcacgttgagatgaaattgttgaagaataaaaagttaacg---tctcctacgggtgtgacggataaatgggatagtgaatcgactactt |
49676154 |
T |
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| Q |
401 |
ctaatgtcagcggtcagtcagc |
422 |
Q |
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| T |
49676155 |
ctaatgtcagcggtcagtcagc |
49676176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 140 - 416
Target Start/End: Original strand, 49683928 - 49684201
Alignment:
| Q |
140 |
gtttgcagcgggataaggaattgaggccctcaatggatgaggttttggacgtgctgaggagaattgatagtgttagtgggagggatgagtttggaaatgt |
239 |
Q |
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| T |
49683928 |
gtttgcaacgggacaaggaattgaggccttcaatggatgaggttttggaggtgttgagaaaaatttatagtggcagtgggagggaagagtttggacatga |
49684027 |
T |
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| Q |
240 |
agaggaagtaatagctcgtggagcagtgatgtcgagtattaacgtacgttcactgtcatcgtcttcacccgatcacgttgagatgaaattgttgaagaat |
339 |
Q |
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| T |
49684028 |
agatgaagtaataggtcgtggagcagggatatcacgtattaatgtacgttcactgtcactgtcttcactcgaccacgttgagatgaaattgttgaagaat |
49684127 |
T |
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| Q |
340 |
aaaaaattaacgcctactcctacgggtgtgacagataaatgggatagtgaatcgactacttctaatgtcagcggtca |
416 |
Q |
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| T |
49684128 |
aagaagttaacac---ctcctacagctatgacagataaatcgtatagtgaatcgactgcttctaatgtcagtggtca |
49684201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 49671667 - 49671769
Alignment:
| Q |
109 |
atagtttcgatagcagagttggcttttcagtgtttgcagcgggataaggaattgaggccctcaatggatgaggttttggacgtgctgaggagaattgata |
208 |
Q |
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| T |
49671667 |
atagtttcggtggcagagttagcttttcaatgtttgcaaagggacaaggaattgagaccttccatggaagaggttttgaagatgttgatgagaattgaaa |
49671766 |
T |
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| Q |
209 |
gtg |
211 |
Q |
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| T |
49671767 |
gtg |
49671769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 49667617 - 49667733
Alignment:
| Q |
30 |
gaagattcaaaaaagtaaaatccatgagcttgtggatccttcccttggctttgagtcagataaggatgttaaaaggaaaatagtttcgatagcagagttg |
129 |
Q |
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| T |
49667617 |
gaagattcaagaaagtgcaattgatgagctcgtagatccttctcttggttttcattcagacagtgaggttaataggatgatagtttcagtggcagaattg |
49667716 |
T |
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| Q |
130 |
gcttttcagtgtttgca |
146 |
Q |
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| T |
49667717 |
gcttttcagtgtttgca |
49667733 |
T |
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