View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_high_10 (Length: 403)

Name: NF8511_high_10
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_high_10
NF8511_high_10
[»] chr5 (2 HSPs)
chr5 (17-390)||(41557934-41558307)
chr5 (258-338)||(683371-683451)
[»] chr2 (2 HSPs)
chr2 (117-233)||(987360-987476)
chr2 (191-235)||(9394585-9394629)
[»] chr8 (1 HSPs)
chr8 (302-383)||(28485612-28485693)
[»] chr6 (2 HSPs)
chr6 (188-235)||(1315079-1315126)
chr6 (113-161)||(19049548-19049596)
[»] chr3 (2 HSPs)
chr3 (258-339)||(28596860-28596941)
chr3 (183-235)||(31888776-31888828)
[»] chr1 (1 HSPs)
chr1 (190-235)||(3332564-3332609)
[»] chr4 (1 HSPs)
chr4 (195-235)||(1074172-1074212)


Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 41557934 - 41558307
Alignment:
Q  17 aaacccatgttcgcagattaggtcactcactctatctttttatattttcatcaatgtgtaatgttccattaaaccactaaattcgtccttgatcattgag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41557934 aaacccatgttcgcagattaggtcactcactctatctttttatattttcatcaatgtgtaatgttccattaaaccactaaattcgtccttgatcattgag 41558033  T
Q  117 attatgaatatttttaaaaggtgtgtgactctgtcaaattttacttctgttagaacttctgaaagcatgctagggactaaattggtggtaagtggttaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41558034 attatgaatatttttaaaaggtgtgtgactctgtcaaattttacttctgttagaacttctgaaagcatgctagggactaaattggtggtaagtggttaaa 41558133  T
Q  217 tataaggaccaaattgatatagggatctaagtaatatttaatggttaaacatagggatcatcttgagagtttaatagtgtaacaaaccttttcgaaatat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41558134 tataaggaccaaattgatatagggatctaagtaatatttaatggttaaacatagggatcatcttgagagtttaatagtgtaacaaaccttttcgaaatat 41558233  T
Q  317 tcataatctcagggacctatttgaaatcggtgtacgaagtaagggactaatttagtagtttactcattgtattc 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41558234 tcataatctcagggacctatttgaaatcggtgtacgaagtaagggactaatttagtagtttactcattgtattc 41558307  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 338
Target Start/End: Complemental strand, 683451 - 683371
Alignment:
Q  258 tggttaaacatagggatcatcttgagagtttaatagtgtaacaaaccttttcgaaatattcataatctcagggacctattt 338  Q
    |||||||| ||| |||||| ||||| | |||||||| || | | ||||||| |||||| ||||||| ||||||||||||||    
T  683451 tggttaaatataaggatcaacttgacaatttaatagagtcagagacctttttgaaatagtcataatttcagggacctattt 683371  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 987360 - 987476
Alignment:
Q  117 attatgaatatttttaaaaggtgtgtgactctgtcaaattttacttctgttagaacttctgaaagcatgctagggactaaattggtggtaagtggttaaa 216  Q
    |||||||||||||  |||||||   ||||| |||||||||| |||  | ||||  ||||||||| |||| || ||||||||||  || ||||||||||||    
T  987360 attatgaatatttcaaaaaggtccctgactttgtcaaatttcactcatattagtccttctgaaaacatgttaaggactaaattaatgataagtggttaaa 987459  T
Q  217 tataaggaccaaattga 233  Q
     ||| ||||||||||||    
T  987460 gatagggaccaaattga 987476  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 9394585 - 9394629
Alignment:
Q  191 gactaaattggtggtaagtggttaaatataaggaccaaattgata 235  Q
    |||||||||| | ||||||||||||||||| || |||||||||||    
T  9394585 gactaaattgatagtaagtggttaaatatatggcccaaattgata 9394629  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 383
Target Start/End: Original strand, 28485612 - 28485693
Alignment:
Q  302 accttttcgaaatattcataatctcagggacctatttgaaatcggtgtacgaagtaagggactaatttagtagtttactcat 383  Q
    ||||||| |||||||||||| | |||||||| ||||||||  ||   ||| |||| |||||||||||| |||||||||||||    
T  28485612 acctttttgaaatattcatactttcagggacttatttgaatgcgccctacaaagtcagggactaatttggtagtttactcat 28485693  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 1315126 - 1315079
Alignment:
Q  188 agggactaaattggtggtaagtggttaaatataaggaccaaattgata 235  Q
    ||||||||||||| |  |||||||||||||||||||| ||||||||||    
T  1315126 agggactaaattgatattaagtggttaaatataaggatcaaattgata 1315079  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 19049548 - 19049596
Alignment:
Q  113 tgagattatgaatatttttaaaaggtgtgtgactctgtcaaattttact 161  Q
    |||||||||||||||||| ||||||| |  ||||||||| |||||||||    
T  19049548 tgagattatgaatattttgaaaaggtctcggactctgtcgaattttact 19049596  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 28596860 - 28596941
Alignment:
Q  258 tggttaaacatagggatcatcttgagagtttaatagtgtaacaaaccttttcgaaatattcataatctcagggacctatttg 339  Q
    |||| ||| ||||||| || ||||| |||||||||| ||    ||||||||| |||||||||| || |||||||||||||||    
T  28596860 tggtgaaatatagggaccaacttgacagtttaatagagtccggaaccttttcaaaatattcattatttcagggacctatttg 28596941  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 31888776 - 31888828
Alignment:
Q  183 atgctagggactaaattggtggtaagtggttaaatataaggaccaaattgata 235  Q
    |||||||||||| ||||| |||||| | ||||||||||||||| || ||||||    
T  31888776 atgctagggactgaattgatggtaacttgttaaatataaggactaatttgata 31888828  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 3332564 - 3332609
Alignment:
Q  190 ggactaaattggtggtaagtggttaaatataaggaccaaattgata 235  Q
    ||||||||||| | |||||||||||||||||  |||||||||||||    
T  3332564 ggactaaattgatagtaagtggttaaatatacagaccaaattgata 3332609  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 1074172 - 1074212
Alignment:
Q  195 aaattggtggtaagtggttaaatataaggaccaaattgata 235  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  1074172 aaattgatagtaagtggctaaatataaggaccaaattgata 1074212  T

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