View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_high_11 (Length: 400)
Name: NF8511_high_11
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 384
Target Start/End: Original strand, 36360716 - 36361085
Alignment:
| Q |
15 |
agaccatgacaaaacagttgtttgggttgcaaacagaaacaccccacttcaaaatccaactgcttttctcaaactaacaaatacaggaaaccttattatc |
114 |
Q |
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| T |
36360716 |
agaccatgacaaaacagttgtttgggttgcaaacagaaacaccccacttcaaaatccaactgcttttctcaaactaacaaacacaggaaaccttattatc |
36360815 |
T |
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| Q |
115 |
atcaatgaatccaacaaaaccatttggtcttcagatcaaaccaatcaaaattccaccttaaacaaaaatccaattcttcagcttttagattctggaaatt |
214 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36360816 |
atcaatgaatccaacaaaaccatttggtcttcaaatcaaaccaatcaaaattccaccttaaacacaaatccaattcttcagcttttagattctggaaatt |
36360915 |
T |
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| Q |
215 |
tggttgtaacaacagaaccaaatgaaaatgatccaacaaattttctatggcaaagttttgattaccctacagatactttgttacctggtatgaaacttgg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36360916 |
tggttgtaacaacagaaccaaatgaaaatgatccaacaaattttctatggcaaagttttgattaccctacagatactttgttacctggtatgaaacttgg |
36361015 |
T |
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| Q |
315 |
ttggaacttcaacacgaacacagaaacacacataaattcatggaagcaaacagatcaagacccttcaatt |
384 |
Q |
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| T |
36361016 |
ttggaacttcgacacgaacacagaaacacacataaattcatggaaacaaacagatcaagacccttcaatt |
36361085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 360
Target Start/End: Complemental strand, 2686131 - 2686012
Alignment:
| Q |
241 |
aatgatccaacaaattttctatggcaaagttttgattaccctacagatactttgttacctggtatgaaacttggttggaacttcaacacgaacacagaaa |
340 |
Q |
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| T |
2686131 |
aatgatccgacaaaatatctatggcaaagctttgattatccaacagatactttgttaccatccatgaatatcggttggaacttcgacaaaaacacagaaa |
2686032 |
T |
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| Q |
341 |
cacacataaattcatggaag |
360 |
Q |
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|||| ||| ||||||||| |
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| T |
2686031 |
aacacttaacatcatggaag |
2686012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 2669927 - 2669988
Alignment:
| Q |
260 |
tatggcaaagttttgattaccctacagatactttgttacctggtatgaaacttggttggaac |
321 |
Q |
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||||||| ||||||||| | || ||||||||||||||||| || |||||||||||||||||| |
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| T |
2669927 |
tatggcagagttttgatcatccaacagatactttgttaccagggatgaaacttggttggaac |
2669988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 2664783 - 2664719
Alignment:
| Q |
262 |
tggcaaagttttgattaccctacagatactttgttacctggtatgaaacttggttggaacttcaa |
326 |
Q |
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||||||||||| ||||| ||| | |||| |||||||| || |||||||||||| |||||||||| |
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| T |
2664783 |
tggcaaagtttcgattatccttctaatacattgttaccaggaatgaaacttggtaggaacttcaa |
2664719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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