View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_high_15 (Length: 366)
Name: NF8511_high_15
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_high_15 |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 34514891 - 34515234
Alignment:
| Q |
20 |
accagaaaacaaaaactgctaacagaacagcagacctgaggctaacatatacaaaactgcagtacaccaaaccgaagctcatatataaaacttaattaac |
119 |
Q |
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| T |
34514891 |
accagaaaacaaaaactgctaacagaacagcagacctgaggctaacatatacaaaactgcagtacaccaaaccgaagctcatatataaaacttaattaac |
34514990 |
T |
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| Q |
120 |
ttcttatgtatgttgttttagttcacgcgtgatgcatgtgaacaatgaacttagttaaagtagcaggtagatgaaaaaggaaggatataatgattaaaaa |
219 |
Q |
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| T |
34514991 |
ttcttatgtatgttgttttagttcacgcgtgatgcatgtgaacaatgaacttagttaaagtagcaggtagatgaaaaaggaaggatataatgattaaaaa |
34515090 |
T |
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| Q |
220 |
tattaaaaggcattagaggcatttttgtcaaaaagggtgtactagaaaaagtcctattatagtacttctttgtggctcttatattattatttctctctct |
319 |
Q |
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| T |
34515091 |
tattaaaaggcattagaggcatttttgtcaaaaagggtgtactagaaaaagtcctatta---tacttctttgtggctcttatattattatttctctctct |
34515187 |
T |
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| Q |
320 |
ttttaccatttcttttcacatcctaacataaatggagagtttgaaat |
366 |
Q |
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| T |
34515188 |
ttttaccatttcttttcacatcctaacataaatggagagtttgaaat |
34515234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 274
Target Start/End: Original strand, 34508907 - 34509008
Alignment:
| Q |
161 |
acaatgaacttagttaaagtagcaggtagatgaaaaaggaaggatataatgattaaaaatattaaaaggcattagaggcatttttgtcaaaaagggtgta |
260 |
Q |
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| T |
34508907 |
acaatgaacttagttaaagtagcaggtagatgaaaaaggaaggat------------gatataaaaatgcatcagaggcatttttgacaaaaagggtgta |
34508994 |
T |
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| Q |
261 |
ctagaaaaagtcct |
274 |
Q |
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| T |
34508995 |
ctagaaaaactcct |
34509008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 34509008 - 34509044
Alignment:
| Q |
330 |
tcttttcacatcctaacataaatggagagtttgaaat |
366 |
Q |
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| T |
34509008 |
tcttttcacatcctaacaaaaatggagagtttgaaat |
34509044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 34515389 - 34515425
Alignment:
| Q |
330 |
tcttttcacatcctaacataaatggagagtttgaaat |
366 |
Q |
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| T |
34515389 |
tcttttcacatcctaacaaaaatggagagtttgaaat |
34515425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 5038292 - 5038233
Alignment:
| Q |
34 |
actgctaacagaacagcagacctgaggctaacatatacaaaactgcagtacaccaaaccg |
93 |
Q |
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| T |
5038292 |
actgctaacagaacagcagacttgaggctaacatatacaaaactgcagtacaccaaaccg |
5038233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 2805 - 2749
Alignment:
| Q |
34 |
actgctaacagaacagcagacctgaggctaacatatacaaaactgcagtacaccaaa |
90 |
Q |
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| T |
2805 |
actgctaacagaacagcagacctgaggctaacatataccaaactgcagtacaccaaa |
2749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 47644487 - 47644543
Alignment:
| Q |
34 |
actgctaacagaacagcagacctgaggctaacatatacaaaactgcagtacaccaaa |
90 |
Q |
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| T |
47644487 |
actgctaacagaacagcagacctgaggctaacatataccaaactgcagtacaccaaa |
47644543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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