View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_high_24 (Length: 273)
Name: NF8511_high_24
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_high_24 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 15545633 - 15545895
Alignment:
| Q |
11 |
cagagaaaatgtatgcaactagacttctttccatgtacaaaatgaatcctagtgctctttcagatccaccaccatcagggccaaattcaagttatcttgt |
110 |
Q |
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| T |
15545633 |
cagagaaaatgtatgcaacaagacttctttccatgtacaaaatgaatcctagtgcactttcagacccaccaccatcaggaccaaattcaagttatcttgt |
15545732 |
T |
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| Q |
111 |
gatattggatgaggaagctcaaacttactgctgttttggtttgtgcaaggaccatagaatcaagaattttcctatccctcagaacaaagatgtaaccatc |
210 |
Q |
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| T |
15545733 |
gatattggatgaagaagctcaaacttactgctgttttggtttgtgcaaggaccatagaatcaagaattttcctatccctcagaacaaagaggtaaccatc |
15545832 |
T |
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| Q |
211 |
aattatacatcttgtatagacaatatgataactggagaaatgaacacatacagtgaagaagcc |
273 |
Q |
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| T |
15545833 |
aattatacatcttgtatagaaaatatgataactagagaaataaacacatacagtgaagaagcc |
15545895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 15528200 - 15528407
Alignment:
| Q |
15 |
gaaaatgtatgcaactagacttctttccatgtacaaaatgaatcctagtgctctttcagatccaccaccatcagggccaaattcaagttatcttgtgata |
114 |
Q |
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| T |
15528200 |
gaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgctctttcagacccaccaccatcggggccaaattcaagttatcttgtgata |
15528299 |
T |
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| Q |
115 |
ttggatgaggaagctcaaacttactgctgttttggtttgtgcaaggaccatagaatcaagaattttcctatccctcagaacaaagatgtaaccatcaatt |
214 |
Q |
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| T |
15528300 |
ttggatgaagaagctcaaacttactcttgttttggtttgtccaaagacaatagaatcaagaattttcctctacctcagaacaaaaatgtaaccatcaatt |
15528399 |
T |
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| Q |
215 |
atacatct |
222 |
Q |
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| T |
15528400 |
attcatct |
15528407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 15522069 - 15522268
Alignment:
| Q |
15 |
gaaaatgtatgcaactagacttctttccatgtacaaaatgaatcctagtgctctttcagatccaccaccatcagggccaaattcaagttatcttgtgata |
114 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15522069 |
gaaaatgtatgcaacaagacttctttccatgtacaaaaggaatcctagtgctctttcagatccaccaccatcaggaccaaattcaagttatcttgtgata |
15522168 |
T |
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| Q |
115 |
ttggatgaggaagctcaaacttactgctgttttggtttgtgcaaggaccatagaatcaagaattttcctatccctcagaacaaagatgtaaccatcaatt |
214 |
Q |
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| T |
15522169 |
ttggatgaagtagctcaaacttactcttgttttggtttgtcaaaagacaatagaatcaagaattttcctttacctcagaacaaaaatttaaccatcaatt |
15522268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 15517775 - 15517975
Alignment:
| Q |
11 |
cagagaaaatgtatgcaactagacttctttccatgtacaaaatgaatcctagtgctctttcagatccaccaccatcagggccaaattcaagttatcttgt |
110 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
15517775 |
cagagaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgcactttcagacccaccaccatcggggccaaattcaagttatcttgt |
15517874 |
T |
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| Q |
111 |
gatattggatgaggaagctcaaacttactgctgttttggtttgtgcaaggaccatagaatcaagaattttcctatccctcagaacaaagatgtaaccatc |
210 |
Q |
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| T |
15517875 |
gatattggatgaagaagctcaaacttactcttgttttggtttgtgcaaggatactagaatcaagaattttcctttacctcaaaacaaaaatttaaccatc |
15517974 |
T |
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| Q |
211 |
a |
211 |
Q |
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| T |
15517975 |
a |
15517975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 15550370 - 15550491
Alignment:
| Q |
18 |
aatgtatgcaactagacttctttccatgtacaaaatgaatcctagtgctctttcagatccaccaccatcagggccaaattcaagttatcttgtgatattg |
117 |
Q |
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|||||||||| | ||||||||||||||||| |||| ||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||| |||||| |
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| T |
15550370 |
aatgtatgcagcaagacttctttccatgtataaaaggaaccctagtgctctttcagatcaaccaccatcaggtccaaattccggttatcttgtaatattg |
15550469 |
T |
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| Q |
118 |
gatgaggaagctcaaacttact |
139 |
Q |
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| T |
15550470 |
gatgaagaagctcaaacttact |
15550491 |
T |
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