View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_high_31 (Length: 248)
Name: NF8511_high_31
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_high_31 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 36473477 - 36473708
Alignment:
| Q |
16 |
gacatcattcggaggtgttagttatgacaaggtggtataagagattgagtcatattttatgccacatgtcacatttaggtactaatctttatgttctttg |
115 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
36473477 |
gacatcattccgaggtgttagttatgacaaggtggtataagagatt-agtcatattttatgccacatgtcacatttaggtggtaatcttgatgttctttg |
36473575 |
T |
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| Q |
116 |
acttggtccatttgttagatcttcctatgttattcctgaagagctaatttgcttggactccttaacgaatgactagcctgggctaatttgcttggattcc |
215 |
Q |
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| T |
36473576 |
acttggtccatttgttagatcttcctatgttattcctgaagagctaatttgcttggactccttaatgaatgactagcctggcctaatttgcttgaattcc |
36473675 |
T |
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| Q |
216 |
ttaatgaatgactagcttggaccttttaggccc |
248 |
Q |
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| T |
36473676 |
ttaatgaatgactagcttggaccttttaggccc |
36473708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 36464110 - 36464342
Alignment:
| Q |
16 |
gacatcattcggaggtgttagttatgacaaggtggtataagagattgagtcatattttatgccacatgtcacatttaggtactaatctttatgttctttg |
115 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| || ||||||| |
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| T |
36464110 |
gacatcattccgaggtgttagttatgacaaggtggtatgagagattaagtcatattttatgccacatgtcacatttaggtggtaatcttgatattctttg |
36464209 |
T |
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| Q |
116 |
acttggtccatttgttagatcttcctatgttattcctgaagagctaatttgcttggactccttaacgaatgactagcctgggctaatttgcttggattcc |
215 |
Q |
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| T |
36464210 |
acttggtccatttgttagatcttcctatgttattcttgaagagctaatttgcttggactccttaacgaatgactagcctggcctaatttgcttggattcc |
36464309 |
T |
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| Q |
216 |
ttaatgaatgactagcttggaccttttaggccc |
248 |
Q |
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| T |
36464310 |
ttaatgaatgactggcttggaccttttaggccc |
36464342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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