View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_high_32 (Length: 241)
Name: NF8511_high_32
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_high_32 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 30286909 - 30287132
Alignment:
| Q |
18 |
ggtatactgtattctcactcagtctctttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaannn |
117 |
Q |
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| T |
30286909 |
ggtatactgtattctcactcagtctctttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaattt |
30287008 |
T |
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| Q |
118 |
nnnnnnnnnaatgacatgttaacattaattaaaagatttgcttctacttaattgaataagaaaaagctaattaagatatgtttattttttgtgtgattgg |
217 |
Q |
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| T |
30287009 |
tttatttttaatgacatgttaacattaattaaaagatttgcttctacttaattgaataagaaaaagctaattaagatatgtttattttttgtgtgattgg |
30287108 |
T |
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| Q |
218 |
aaatttgaaggtgaggaggacaat |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
30287109 |
aaatttgaaggtgaggaggacaat |
30287132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 30291943 - 30292166
Alignment:
| Q |
18 |
ggtatactgtattctcactcagtctctttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaannn |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30291943 |
ggtatactgtattctcactcagtctctttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaattt |
30292042 |
T |
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| Q |
118 |
nnnnnnnnnaatgacatgttaacattaattaaaagatttgcttctacttaattgaataagaaaaagctaattaagatatgtttattttttgtgtgattgg |
217 |
Q |
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| T |
30292043 |
tttatttttaatgacatgttaacattaattaaaagatttgcttctacttaattgaataagaaaaagctaattaagatatgtttattttttgtgtgattgg |
30292142 |
T |
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| Q |
218 |
aaatttgaaggtgaggaggacaat |
241 |
Q |
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| T |
30292143 |
aaatttgaaggtgaggaggacaat |
30292166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 30304577 - 30304800
Alignment:
| Q |
18 |
ggtatactgtattctcactcagtctctttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaannn |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30304577 |
ggtatactgtattctcactcagtctctttctgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaattt |
30304676 |
T |
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| Q |
118 |
nnnnnnnnnaatgacatgttaacattaattaaaagatttgcttctacttaattgaataagaaaaagctaattaagatatgtttattttttgtgtgattgg |
217 |
Q |
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| T |
30304677 |
tttatttttaatgacatgttaacattaattaaaagatttgcttctacttaattgaataagaaaaagctaattaagatatgtttattttttgtgtgattgg |
30304776 |
T |
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| Q |
218 |
aaatttgaaggtgaggaggacaat |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
30304777 |
aaatttgaaggtgaggaggacaat |
30304800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 30315494 - 30315651
Alignment:
| Q |
20 |
tatactgtattctcactcagtctctttc----tgtatggcctaattacaatagtttcctaccaaaattaaattaaattgaatgtagcatatgttagtaan |
115 |
Q |
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|||||| ||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| | |
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| T |
30315494 |
tatactatattctcactcggtctctttccttctgtatggcctaattacaatagttttctaccaaaattaaattaaattgaatgtagcctatattagttat |
30315593 |
T |
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| Q |
116 |
nnnnnnnnnnnaatgacatgttaacattaattaaaagatttgcttctacttaattgaa |
173 |
Q |
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| T |
30315594 |
tttttatttttaatgacatgttaacattatttaaaatatttggttctacttaattgaa |
30315651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 30299930 - 30300008
Alignment:
| Q |
162 |
tacttaattgaataagaaaaagctaattaagatatgtttattttttgtgtgattggaaatttgaaggtgaggaggacaat |
241 |
Q |
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| T |
30299930 |
tacttaaatgaatgagtaaaatctaattaagatatgttta-tttttgtgtgatttcaaatttgaaggtgaggaagacaat |
30300008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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