View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_high_34 (Length: 240)
Name: NF8511_high_34
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5276599 - 5276822
Alignment:
| Q |
1 |
catcatcattttgtcctacaattccaaaaccaaacaagttaatcatatata--agagacaatgcagaatttcaaatgaatgaaaaacagagtattttaga |
98 |
Q |
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| T |
5276599 |
catcatcattttgtcctacaattccaaaaccaaa-aagttaatcacatatattagagacaatgcagaatttcaaatgaatgaaaaacagagtattttaca |
5276697 |
T |
|
| Q |
99 |
aaacagagcacatgaaaggaataaaaagcataccataacagaattccaaggcattgtaggaaggagttgattgaacaaatcagtgaaacccaattcatca |
198 |
Q |
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| T |
5276698 |
aaacagagcacatgaaaggaataaaaagcataccataacagaattccaaggcattgtaggaaggagttgattgaacaaatcagtgaaacccaattcatca |
5276797 |
T |
|
| Q |
199 |
atcaaccaattatcactgtcacaat |
223 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
5276798 |
atcaaccaattatcactgtcacaat |
5276822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 5272745 - 5272851
Alignment:
| Q |
117 |
gaataaaaagcataccataacagaattccaaggcattgtaggaaggagttgattgaacaaatcagtgaaacccaattcatcaatcaaccaattatcactg |
216 |
Q |
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||||||||| |||||||| || ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5272745 |
gaataaaaaacataccatgacggaattccaaggcattgtgggaaggagctgattgaacaaatcggtgaaacccaattcatcaatcaaccaattatcacta |
5272844 |
T |
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| Q |
217 |
tcacaat |
223 |
Q |
| |
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||||||| |
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| T |
5272845 |
tcacaat |
5272851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 223
Target Start/End: Complemental strand, 5249823 - 5249697
Alignment:
| Q |
98 |
aaaacagagcacatgaaaggaataaaaag-cataccataacagaattccaaggcattgtaggaaggagttgattgaacaaatcagtgaaacccaattcat |
196 |
Q |
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| T |
5249823 |
aaaacagagtacatgaagggaacaaaaaaacataccatgagagaattccaaggcatagtgggaaggagctgattgaacaaatcagtgaaacccaattcat |
5249724 |
T |
|
| Q |
197 |
caatcaaccaattatcactgtcacaat |
223 |
Q |
| |
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|||| | |||||||||||||||||||| |
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| T |
5249723 |
caataacccaattatcactgtcacaat |
5249697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 5269081 - 5268932
Alignment:
| Q |
74 |
tgaatgaaaaacagagtattttagaaaacagagcacatgaaaggaataaaaagcataccataacagaattccaaggcattgtaggaaggagttgattgaa |
173 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |||||| || | |||| |||||||| | |||||| ||||||| || ||||||||||||||||| |
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| T |
5269081 |
tgaatgaaaaacagagtatttttaaaaacagagcatatgaaaagagtgaaaaacataccatgagagaattgaaaggcatagtgggaaggagttgattgaa |
5268982 |
T |
|
| Q |
174 |
caaatcagtgaaacccaattcatcaatcaaccaattatcactgtcacaat |
223 |
Q |
| |
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|||||| |||||||| |||||||||| | |||||||||||| ||||||| |
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|
| T |
5268981 |
caaatcggtgaaacctaattcatcaacaacccaattatcactatcacaat |
5268932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 43110843 - 43110922
Alignment:
| Q |
142 |
ttccaaggcattgtaggaaggagttgattgaacaaatcagtgaaacccaattcatcaatcaaccaattatcactgtcaca |
221 |
Q |
| |
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||||| ||||| || |||| |||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||| |
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| T |
43110843 |
ttccatggcatggtgggaacaagttcattgaacaaatcagtgaaacccaattcatcaacaacccagttatcactgtcaca |
43110922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 26315741 - 26315814
Alignment:
| Q |
148 |
ggcattgtaggaaggagttgattgaacaaatcagtgaaacccaattcatcaatcaaccaattatcactgtcaca |
221 |
Q |
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| T |
26315741 |
ggcatggtgggaaagagttgattgaacaaatcattgaaacctaattcatcaacaacccagttatcgctgtcaca |
26315814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 19569243 - 19569166
Alignment:
| Q |
146 |
aaggcattgtaggaaggagttgattgaacaaatcagtgaaacccaattcatcaatcaaccaattatcactgtcacaat |
223 |
Q |
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||||||| ||| |||||||||||||||||||||| ||||||| |||||||||| |||||||||||| ||||||| |
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| T |
19569243 |
aaggcatagtaagaaggagttgattgaacaaatcgatgaaacctaattcatcaacatcccaattatcactatcacaat |
19569166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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