View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_high_37 (Length: 238)
Name: NF8511_high_37
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 21691093 - 21691005
Alignment:
| Q |
40 |
caccttgaatatatatgattaattgttttaattgtattgaataatgtatgtgaggttcaagggtgttacaatactaaagctggatgatt |
128 |
Q |
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| T |
21691093 |
caccttgaatatatatgattaattgttttaattgtattgaataatgtatgtgaggttcaagggtgttacaatgccaaagctggatgatt |
21691005 |
T |
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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 21691001 - 21690943
Alignment:
| Q |
70 |
attgtattgaataatgtatgtgaggttcaagggtgttacaatactaaagctggatgatt |
128 |
Q |
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| T |
21691001 |
attgtattgaataatgtatgtgaggttcaagggtgttacaatgccaaagttggatgatt |
21690943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 21690686 - 21690639
Alignment:
| Q |
172 |
gctccttttaatagattttgttaggagttcttgaatgtcttcatcttg |
219 |
Q |
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| T |
21690686 |
gctccttttaatagattttgttaggagttcttgaatgtattcatcttg |
21690639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 25987063 - 25987171
Alignment:
| Q |
1 |
aaatgaattatgcatgatttggagttattggtgaagtagcaccttgaatatatatgattaattgttttaattgtattgaataatgtatgtgaggttcaag |
100 |
Q |
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| T |
25987063 |
aaatgatttatgcatgattttgagttatagatgaagtaacaccttgaatatatatgattaattgctttaattgtattaaatattgtatgcgaagttcaag |
25987162 |
T |
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| Q |
101 |
ggtgttaca |
109 |
Q |
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| T |
25987163 |
ggtgttaca |
25987171 |
T |
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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 10696140 - 10696246
Alignment:
| Q |
1 |
aaatgaattatgcatgatttggagttattggtgaagtagcaccttgaatatatatgattaattgttttaattgtattgaataatgtatgtgaggttcaag |
100 |
Q |
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| T |
10696140 |
aaatgaattatgcatgattttgacttactgatgaagtagcaccttaaatgtatatgattaattattttaattgttttaaatattgtatgttgggttgaag |
10696239 |
T |
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| Q |
101 |
ggtgtta |
107 |
Q |
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| T |
10696240 |
ggtgtta |
10696246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 10579296 - 10579352
Alignment:
| Q |
9 |
tatgcatgatttggagttattggtgaagtagcaccttgaatatatatgattaattgtt |
66 |
Q |
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| T |
10579296 |
tatgcatgttttgga-ttaatgatgaagtagcaccttgaatttatatgaataattgtt |
10579352 |
T |
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