View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_high_8 (Length: 438)
Name: NF8511_high_8
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 426
Target Start/End: Complemental strand, 872382 - 871962
Alignment:
| Q |
13 |
agtaatattgtcactgttcttcataacttataagataagtcaacctttggtatattaagctctttcacatcatacagacattgatttggagtcgaaca-- |
110 |
Q |
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| T |
872382 |
agtaatattgtcactgctcttcataacttataagataagtcaacctttggactattaagctctttcacatcatacatacattgatttggagtcgaacgaa |
872283 |
T |
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| Q |
111 |
--ttcataacttattttcactctccaagggcaaaatataacttgatgccattaggattgcgataaacacacatgctaaaataataaaattggatgcaatc |
208 |
Q |
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| T |
872282 |
ctttcgtaacttattttcactgtccaagggcaaaatataacttgatgccattaggattgcgataaacacacatgctaaaataataaaattggatgcaatc |
872183 |
T |
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| Q |
209 |
aactataccattacattatagcatgctatataaacgggnnnnnnnaagtagaaaaaca---gaaagtgtaaatattccatgacttaaaacaccagtctca |
305 |
Q |
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| T |
872182 |
aactataccattacattatagcatgctatataaacgggtttttttaagtagaaaaacatgtgaaagtgtaaatattccatgacttaaaacaccagtctcg |
872083 |
T |
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| Q |
306 |
aactaaaaaattaaaagggctaattggtaacaaaatagcagtagtgcattttcacaatggtgaaagatccattttaccagttgcatcgaccctcatttgg |
405 |
Q |
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| T |
872082 |
aactaaaaaattaaaagggctaattggtaataaaatagcagtagtgcattttcacaatggtgaaagacccattttaccagttgcatcgaccctcatttgg |
871983 |
T |
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| Q |
406 |
aaatactcatcatgatgtcca |
426 |
Q |
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| T |
871982 |
aaatactcatcatgatctcca |
871962 |
T |
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Back To:
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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 338 - 426
Target Start/End: Original strand, 19731165 - 19731253
Alignment:
| Q |
338 |
aaatagcagtagtgcattttcacaatggtgaaagatccattttaccagttgcatcgaccctcatttggaaatactcatcatgatgtcca |
426 |
Q |
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| T |
19731165 |
aaatagcagcagtgcatttctgcaatggtgaaagacccattttaccagttgcatcggccctcatttggaaatactcatcatgatgtcca |
19731253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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