View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8511_low_10 (Length: 500)
Name: NF8511_low_10
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_10 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 14 - 483
Target Start/End: Complemental strand, 6224952 - 6224483
Alignment:
| Q |
14 |
gacatcataaggtaaggctttattatttaagttgttgacctcattgcgaatgttgaggttgagaacaacggtatcacagctgagaatgtcaatacaagat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| |
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|
| T |
6224952 |
gacatcataaggtaaggctttattatttaagttgttgacctcattgcgaatgttgaggttgagaacaacggtatcatagttgagaatgtcaatgcaagat |
6224853 |
T |
|
| Q |
114 |
agtgtcgtgtttttattgattattcatattcattcctatgtttcttaatgtacaacaatgcttcttgcaccacaaactgtgttgctccctttgtgaagat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6224852 |
agtgtcgtgtttttattgattattcatattcattcctatgtttcttaatgtacagcaatgcttcttgcaccacaaactgtgttgctccctttgtgaagat |
6224753 |
T |
|
| Q |
214 |
cctggatgaagaattcgctaagcaaaagttctgatactcatcatattgatagctagtattgtaacaacaacatttgattcctagcttaaagccacttaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6224752 |
cctggatgaagaattcgctaagcaaaagttctaatactcatcatattgatagctagtattgtaacaacaacatttgattcctagcttaaagccacttaat |
6224653 |
T |
|
| Q |
314 |
tatcgttggtctatatttccaggaattgttaagggatccatgacaaccatacattcctacacaagagaccaggtatattatcaaacatcgtatatttgtt |
413 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
6224652 |
tatcgttggtctatatttccatgaattgttaaggaaaccatgacaaccatacattcctacacaagagaccacgtatattatcaaacatcgtatatttgtt |
6224553 |
T |
|
| Q |
414 |
ggaattgaaaacttgttttacttatgtgtggtccattatttatttttaagctttgttgttgacttggatt |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6224552 |
ggaattgaaaacttgttttacttatgtgtggtccattatttatttttaagctttgttgttgacttggatt |
6224483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 227 - 360
Target Start/End: Original strand, 28247127 - 28247260
Alignment:
| Q |
227 |
ttcgctaagcaaaagttctgatactcatcatattgatagctagtattgtaacaacaacatttgattcctagcttaaagccacttaattatcgttggtcta |
326 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
28247127 |
ttcggtaagcaaaaattctgatactcatcatactgatatctagtattgtaacagcaacatttgattcctagctcaaagccacttaattatctttggtcta |
28247226 |
T |
|
| Q |
327 |
tatttccaggaattgttaagggatccatgacaac |
360 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| |
|
|
| T |
28247227 |
tatttccaggaatttttaagggaaccatgacaac |
28247260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 448
Target Start/End: Complemental strand, 19748908 - 19748475
Alignment:
| Q |
15 |
acatcataaggtaaggctttattatttaagttgttgacctcattgcgaatgttgaggttgagaacaacggtatcacagctgagaatgtcaatacaagata |
114 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||| |||| |||||||||||||| ||||| ||||||||| |||||||||||||| ||||||| |
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|
| T |
19748908 |
acatcataaggtaaggttttaatatttaagttgttgacctcgttgcaaatgttgaggttgaaaacaagggtatcacaactgagaatgtcaatgcaagata |
19748809 |
T |
|
| Q |
115 |
gtgtcgtgtttttattgattattcatattcattcctatgtttcttaatgtacaacaatgcttcttgcaccacaaactgtgttgctccctttgtgaagatc |
214 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19748808 |
gtgttgtgttttgattgattattcatattcattcttatgtttcttaatgtacaacaatgcttcttgcaccacaaactgtcttgctccctttgtgaagatc |
19748709 |
T |
|
| Q |
215 |
ctggatgaagaattcgctaagcaaaagttctgatactcatcatattgatagctagtattgtaacaacaacatttgattcctagcttaaagccacttaatt |
314 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
19748708 |
ctggatgaagaattcggtaagcaaaaattttgatactcatcatactgatagctagtattgtaacaacaacatttgattcctagctcaaagccacctaatt |
19748609 |
T |
|
| Q |
315 |
atcgttggtctatatttccaggaattgttaagggatccatgacaaccatacattcctacacaagagaccaggtatattatcaaacatcgtatatttgttg |
414 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19748608 |
atctttggtctatatttccaggaattgttaagggaaccatgacaaccacacattcctacacatgagaccaggtatattatcaaacatcatatatttgttg |
19748509 |
T |
|
| Q |
415 |
gaattgaaaacttgttttacttatgtgtggtcca |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
19748508 |
gaattgaaaacttgttttacttatgtgtggtcca |
19748475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 458
Target Start/End: Complemental strand, 54182386 - 54181943
Alignment:
| Q |
14 |
gacatcataaggtaaggctttattatttaagttgttgacctcattgcgaatgttgaggttgagaacaacggtatcacagctgagaatgtcaatacaagat |
113 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54182386 |
gacatcataaggtaaggcttaat-atttaagttgttgacctcgttgcggatgttgaggttgagaacaagggtatcacagctgagaatgtcaatacaagat |
54182288 |
T |
|
| Q |
114 |
agtgtcgtgtttttattgattattcatattcattcctatgtttcttaatgtacaacaatgcttcttgcaccacaaactgtgttgctccctttgtgaagat |
213 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54182287 |
agtgttgtgttttgattgattattcatattcgttcttatgtttcttaatgtacagcaatgcttcttgcaccacaaactgtcttgctccctttgtgaagat |
54182188 |
T |
|
| Q |
214 |
cctggatgaagaattcgctaagcaaaagttctgatactcatcatattgatagctagtattgtaacaacaacatttgattcctagcttaaagccacttaat |
313 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
54182187 |
cctggatgaagaattcggtaagcaaatattctgatactcatcatactgatagctagtattgtaacagcaacatttgattcctagctcaaagccacttaat |
54182088 |
T |
|
| Q |
314 |
tatcgttggtctatatttccaggaattgttaagggatccatgacaaccatacattcctacacaagagaccaggtatattatcaaacatcgtatatttgtt |
413 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
54182087 |
catctttggtctatatttccaggaattgttaagggaaccatgacaaccacacattcctacacaggagaccaggtatattatcaaacatcatatgtttgtt |
54181988 |
T |
|
| Q |
414 |
ggaattgaaaacttgttttacttatgtgtggtccattatttattt |
458 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
54181987 |
ggaattgaaaacttgttttacgtatgtgtggtccaatatttattt |
54181943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 330
Target Start/End: Original strand, 5076444 - 5076759
Alignment:
| Q |
14 |
gacatcataaggtaaggctttattatttaagttgttgacctcattgcgaatgttgaggttgagaacaacggtatcacagctgagaatgtcaatacaagat |
113 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
5076444 |
gacatcataaggtaaggctttaatatttaagttgttgacctcgttgtgaatgttgaggttgagaacaagggtatcacaactgagaatgtcaatgcaagat |
5076543 |
T |
|
| Q |
114 |
agtgtcgtgtttttattgattattcatattcattcctatgtttcttaatgtacaacaatgcttcttgcaccacaaactgtgttgctccctttgtgaagat |
213 |
Q |
| |
|
| || ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||||| ||||||||| |
|
|
| T |
5076544 |
aatgatgtgttttgattgat-attcatattcatttttatgtttcttaatgtacaacaatgcttcctgcaccgcaaactgtcttgctccctgtgtgaagat |
5076642 |
T |
|
| Q |
214 |
cctggatgaagaattcgctaagcaaaagttctgatactcatcatattgatagctagtattgtaacaacaacatttgattcctagcttaaagccacttaat |
313 |
Q |
| |
|
|||||||||| |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5076643 |
cctggatgaaaaattcggtaagcaaaaattctgatactcatcatactgatagctagtattgtaacaacaacatttgattcctagctcaaagccacttaat |
5076742 |
T |
|
| Q |
314 |
tatcgttggtctatatt |
330 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
5076743 |
tatctttggtctatatt |
5076759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 330
Target Start/End: Complemental strand, 7412781 - 7412466
Alignment:
| Q |
14 |
gacatcataaggtaaggctttattatttaagttgttgacctcattgcgaatgttgaggttgagaacaacggtatcacagctgagaatgtcaatacaagat |
113 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| |
|
|
| T |
7412781 |
gacatcataaggttaggctttaatatttaagttgttgacctcgttgcggatgttgaggttgagagcaagggtatcacaaatgagaatgtcaatgcaagat |
7412682 |
T |
|
| Q |
114 |
agtgtcgtgtttttattgattattcatattcattcctatgtttcttaatgtacaacaatgcttcttgcaccacaaactgtgttgctccctttgtgaagat |
213 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||| |||||||||||||||||| ||||| ||| | |||| |||||||| ||||||||| ||||||||| |
|
|
| T |
7412681 |
agtgctgtgttttgattgat-attcatattcattcttatgtttcttaatgtacagcaatgtttcctacaccgcaaactgtcttgctccctgtgtgaagat |
7412583 |
T |
|
| Q |
214 |
cctggatgaagaattcgctaagcaaaagttctgatactcatcatattgatagctagtattgtaacaacaacatttgattcctagcttaaagccacttaat |
313 |
Q |
| |
|
|||||||||| |||||| ||||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
7412582 |
cctggatgaaaaattcggtaagcaaaaattatgatactcatcatactgatagctagtattgtaacagcaacatttgattcctagctcaaagccacttaat |
7412483 |
T |
|
| Q |
314 |
tatcgttggtctatatt |
330 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
7412482 |
tatctttggtctatatt |
7412466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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