View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_106 (Length: 225)

Name: NF8511_low_106
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_106
NF8511_low_106
[»] chr3 (3 HSPs)
chr3 (17-206)||(32368336-32368525)
chr3 (3-62)||(32368534-32368594)
chr3 (94-171)||(18645741-18645818)
[»] chr4 (2 HSPs)
chr4 (3-182)||(26076379-26076559)
chr4 (94-171)||(5721971-5722048)
[»] chr2 (2 HSPs)
chr2 (67-189)||(12370874-12370994)
chr2 (109-206)||(3461271-3461368)
[»] chr7 (3 HSPs)
chr7 (59-206)||(5243245-5243396)
chr7 (136-206)||(35898170-35898240)
chr7 (109-188)||(296559-296638)
[»] chr1 (2 HSPs)
chr1 (17-140)||(4958422-4958545)
chr1 (94-189)||(44536499-44536594)
[»] scaffold0038 (1 HSPs)
scaffold0038 (136-189)||(48835-48888)
[»] chr6 (1 HSPs)
chr6 (136-189)||(28248673-28248726)
[»] chr8 (1 HSPs)
chr8 (76-176)||(1183007-1183107)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 32368525 - 32368336
Alignment:
Q  17 tgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggag 116  Q
    |||||||||||  ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  32368525 tgaagtttggcacgatgtttccagctactaacaagaaaggagagtctaagctagagggatactctgattcagaccggtgtggagatagaatggataggag 32368426  T
Q  117 aagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 206  Q
    ||| |||| ||||| |||||||||||| ||||||| |||||| |||||||||||||||| ||||||| ||||| || |||||||||||||    
T  32368425 aagtacttctggctgcctattcaaattcaatgatgctgcaatttcatggtgcactaagagacaaccaatcactgctctatcatcatgtga 32368336  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 32368594 - 32368534
Alignment:
Q  3 atgtgaaagga-ccttgaagtttggcctgatgtttccagctactaacaagaaaagagaggc 62  Q
    ||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||    
T  32368594 atgtgaaaggaaccctgaagtttgccctgatgtttccagctactaacaagaaaggagaggc 32368534  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 18645818 - 18645741
Alignment:
Q  94 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcact 171  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||||    
T  18645818 tgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcact 18645741  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 26076379 - 26076559
Alignment:
Q  3 atgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggaga 101  Q
    |||||||||| || ||||||||||||||| | ||||||||| | || ||   | |||| ||| |  ||||||||||||||||||||||||| |||| |||    
T  26076379 atgtgaaaggtacattgaagtttggcctgttatttccagctgcaaataaagtaggagaagctgaattagagggatactctgattcagactggtgtgaaga 26076478  T
Q  102 tagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaacc 182  Q
    || |||||||||||  ||||||||||||||||||||||| || |||| || |||||||||||||||||  |||||||||||    
T  26076479 tataatggataggaagagcacttatggctacctattcaagttcaatggtgttgcaatctcatggtgcaaaaagaaacaacc 26076559  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 5722048 - 5721971
Alignment:
Q  94 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcact 171  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||||    
T  5722048 tgtggagatctaattgataggagaagcactttaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcact 5721971  T

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Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 12370874 - 12370994
Alignment:
Q  67 ctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggt 166  Q
    |||||||||||||||||||||||||| |||||||||||||||||  ||| |||||| | | ||||||||||||| || |||| || ||||||||||||||    
T  12370874 ctagagggatactctgattcagactggtgtggagatagaatgga--ggaaaagcacctctagctacctattcaagttcaatggtgctgcaatctcatggt 12370971  T
Q  167 gcactaagaaacaaccagtcact 189  Q
    |||| ||||||||||||||||||    
T  12370972 gcacaaagaaacaaccagtcact 12370994  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 3461271 - 3461368
Alignment:
Q  109 gataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 206  Q
    ||||||||||||||||  || ||  | |||||||| ||||||| |||||||||||||||||| ||||| |||||||||||| |  | |||||||||||    
T  3461271 gataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtga 3461368  T

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Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 59 - 206
Target Start/End: Original strand, 5243245 - 5243396
Alignment:
Q  59 aggctaagctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggcta----cctattcaaattaaatgatgatg 154  Q
    ||||||||||||| |||||||| ||||| ||||| |||||| | ||||||||||| |||||||||| ||| ||    | ||||||| || ||||||||||    
T  5243245 aggctaagctagaaggatactcagattctgactggtgtggatagagaatggatagaagaagcacttctggatatatacttattcaagttcaatgatgatg 5243344  T
Q  155 caatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 206  Q
    ||||||||||||| |||||||| |||||||||| | || |||||||||||||    
T  5243345 caatctcatggtgtactaagaagcaaccagtcaatgctctatcatcatgtga 5243396  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 35898170 - 35898240
Alignment:
Q  136 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcactactttatcatcatgtga 206  Q
    |||||||| ||||||| |||||||||||||||||| ||||| |||||||||||| |  | |||||||||||    
T  35898170 ttcaaattcaatgatgctgcaatctcatggtgcacaaagaagcaaccagtcactgcactctcatcatgtga 35898240  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 296559 - 296638
Alignment:
Q  109 gataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcac 188  Q
    ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||| ||||| |||||| ||||    
T  296559 gataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcaccaagaagcaaccaatcac 296638  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 4958545 - 4958422
Alignment:
Q  17 tgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggag 116  Q
    |||||||||||||| | || ||| || | |||||  || |||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||| |     
T  4958545 tgaagtttggcctgttattcccaactgcaaacaaagaaggagaagctgaactagagggatactctgattcagactggtgtggagatagaatggatagaaa 4958446  T
Q  117 aagcacttatggctacctattcaa 140  Q
    |||||| | | |||||||||||||    
T  4958445 aagcacctttagctacctattcaa 4958422  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 189
Target Start/End: Complemental strand, 44536594 - 44536499
Alignment:
Q  94 tgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 189  Q
    |||||||||  ||| ||||||||||||||||  || ||  | |||||||| ||||||| ||||||||| |||||||| ||||| |||||| |||||    
T  44536594 tgtggagatctaattgataggagaagcacttcaggttatgtgttcaaattcaatgatgctgcaatctcctggtgcaccaagaagcaaccaatcact 44536499  T

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Target: scaffold0038 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 48835 - 48888
Alignment:
Q  136 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 189  Q
    |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  48835 ttcaaattcaatgatgctgcaatttcatggtgcaccaagaagcaaccagtcact 48888  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 28248673 - 28248726
Alignment:
Q  136 ttcaaattaaatgatgatgcaatctcatggtgcactaagaaacaaccagtcact 189  Q
    |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||||    
T  28248673 ttcaaattcaatgatgctgcaatttcatggtgcaccaagaagcaaccagtcact 28248726  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 1183007 - 1183107
Alignment:
Q  76 tactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaaattaaatgatgatgcaatctcatggtgcactaaga 175  Q
    |||||||||||||| || |||| ||||||||  |||||||||||||| | ||||||  | ||||| || ||  ||| |||||| |||||||| || ||||    
T  1183007 tactctgattcagattggtgtgaagatagaagtgataggagaagcacatctggctatgtcttcaagttcaacaatgttgcaatatcatggtgtacaaaga 1183106  T
Q  176 a 176  Q
    |    
T  1183107 a 1183107  T

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