View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_108 (Length: 221)
Name: NF8511_low_108
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_108 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 18361325 - 18361129
Alignment:
| Q |
11 |
atcatcactaatttgaaagtcacacatgatttgttcactgtctaaattctttaagtatatcaaagttaacctttgtgaaactaattcttttaccatgtat |
110 |
Q |
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| T |
18361325 |
atcataactactttgaaagtcacacatgatttgttcactgtctaaattctttaagtatatcaaagttaacctttgtgaaactaattcttttaccatgtat |
18361226 |
T |
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| Q |
111 |
gattcgaggaatagaaacatgccaatggttttccttgattgaccgagttacttcctttatgtacttatttggtaccaatttctctaagttgtctctg |
207 |
Q |
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| T |
18361225 |
gattcgaggaatagaaacatgccaatggttttccttgattgaccgagttactttctttaagtacttatttggtaccaatttctttaagttgtctctg |
18361129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 3017498 - 3017302
Alignment:
| Q |
11 |
atcatcactaatttgaaagtcacacatgatttgttcactgtctaaattctttaagtatatcaaagttaacctttgtgaaactaattcttttaccatgtat |
110 |
Q |
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| T |
3017498 |
atcataactactttgaaagtcacacatgatttgatcattgtctaaattcgttaagtaactcaaagttaacctttgtgaaactaattcttttaccatgtat |
3017399 |
T |
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| Q |
111 |
gattcgaggaatagaaacatgccaatggttttccttgattgaccgagttacttcctttatgtacttatttggtaccaatttctctaagttgtctctg |
207 |
Q |
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| T |
3017398 |
gattggagggataggaacatgccaatgattttccttgattgactgagttacttcctttaagtacttatttggtaccaatttctttaagttgtctctg |
3017302 |
T |
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