View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_118 (Length: 202)

Name: NF8511_low_118
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_118
NF8511_low_118
[»] chr4 (6 HSPs)
chr4 (101-202)||(11696075-11696176)
chr4 (101-202)||(11797916-11798017)
chr4 (101-200)||(11779056-11779155)
chr4 (101-202)||(11675979-11676080)
chr4 (101-202)||(11684258-11684359)
chr4 (101-200)||(11701874-11701973)
[»] scaffold0294 (1 HSPs)
scaffold0294 (101-202)||(16517-16618)
[»] scaffold0168 (1 HSPs)
scaffold0168 (14-84)||(25336-25406)


Alignment Details
Target: chr4 (Bit Score: 102; Significance: 7e-51; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 11696176 - 11696075
Alignment:
Q  101 aagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11696176 aagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtgg 11696077  T
Q  201 tc 202  Q
    ||    
T  11696076 tc 11696075  T

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Target: chr4; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 11798017 - 11797916
Alignment:
Q  101 aagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtgg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11798017 aagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccaacccaaacattcacattttcagcagcttttgcagtgctttgtttgagtgg 11797918  T
Q  201 tc 202  Q
    ||    
T  11797917 tc 11797916  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 11779155 - 11779056
Alignment:
Q  101 aagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtgg 200  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| | ||||||  ||||||||||||||||||||||    
T  11779155 aagaatcagcaatgaatgcaccaaagagaggaaggagagaagcagttccagcccaaacattcacattcttagcagcagttgcagtgctttgtttgagtgg 11779056  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 11676080 - 11675979
Alignment:
Q  101 aagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtgg 200  Q
    ||||||||||||  |||||||||||||||||||| |||||||||  ||||||||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  11676080 aagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtgg 11675981  T
Q  201 tc 202  Q
    ||    
T  11675980 tc 11675979  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 11684359 - 11684258
Alignment:
Q  101 aagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtgg 200  Q
    ||||||||||||  |||||||||||||||||||| |||||||||  ||||||||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  11684359 aagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtgg 11684260  T
Q  201 tc 202  Q
    ||    
T  11684259 tc 11684258  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 11701973 - 11701874
Alignment:
Q  101 aagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtgg 200  Q
    ||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||| ||| ||||| | ||||||| |||||||||| |||||||||||    
T  11701973 aagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtgg 11701874  T

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Target: scaffold0294 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 16618 - 16517
Alignment:
Q  101 aagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtgg 200  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  16618 aagaatcagcaacgaaagcacctaagagaggaagtagagaagcagttccagcccaaatattcacattcttagcagctgttgcagtgctttgtttgagtgg 16519  T
Q  201 tc 202  Q
    ||    
T  16518 tc 16517  T

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Target: scaffold0168 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 25336 - 25406
Alignment:
Q  14 gatggacatcttagaaccaactccagttgatgccgatggaaatgcacgtcaagatggtacatctctctctt 84  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25336 gatgaacatcttagaaccaactccagttgatgccgatggaaatgcacgtcaagatggtacttctctctctt 25406  T

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