View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8511_low_12 (Length: 494)
Name: NF8511_low_12
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 41388915 - 41389386
Alignment:
| Q |
1 |
ggtccttcaattgtacacaggaaatgcttttagaatgctgcaaaatggtttggtttggtttaggtacaatgttcttgtttcgcaattcaatagcgacttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41388915 |
ggtccttcaattgtacacaggaaatgcttttagaatgctgcaaaatggt-----ttggtttaggtacaatgttcttgtttcgcaattcaatagcgacttg |
41389009 |
T |
|
| Q |
101 |
cgacgatggataattttttcttgataaagtatttatgtaatgttagaacggtgaagtcactgaagctggagttacatggcatagttaattctttcattta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41389010 |
cgacgatggataattttttcttgataaagtatttatgtaatgttagaacggtgaagtcactgaagctggagttacatggcatagttaattctttcattta |
41389109 |
T |
|
| Q |
201 |
ttttgttttaccaattaccaattggtaatgttgaacagttgatcttgatctttaactataaatcaaagacatttcaatttatctacatgcttctccataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41389110 |
ttttgttttaccaattaccaattggtaatgttgaacagttgatcttgatctttaactataaatcaaagacatttcaatttatctacatgcttctccataa |
41389209 |
T |
|
| Q |
301 |
tcataattgaagttgagtagggtgctatagttttataccaaaaaagaagaataaccacagtatatacttttcaagtaagttaaatcaggccctccatttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41389210 |
tcataattgaagttgagtagggtgctatagttttataccaaaaaagaagaataaccacagtatatacttttcaagcaagttaaatcaggccctccatttt |
41389309 |
T |
|
| Q |
401 |
ttgtcctaatacatgtccatgtattggattatatatgaaattcatcctcttgtacgttaaacaggttttctaaattt |
477 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41389310 |
ttgtccaaatacatgtccatgtattggattatatatgaaattcatcctcttgtacgttaaacaggttttctaaattt |
41389386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University