View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_14 (Length: 475)
Name: NF8511_low_14
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 9148462 - 9148069
Alignment:
| Q |
1 |
gattccttattgtacaacgaa-acattgtgggagtttaacaaccttttaatatgagat-gccatcaattggaattttattatgaatgagcctcaaaattc |
98 |
Q |
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| T |
9148462 |
gattccttattgtacaacgaacacattgtgggagtttaacaaccttttaatatgagattgccatctattggaattttattatgattgagcctccaaatta |
9148363 |
T |
|
| Q |
99 |
gcaaggatttttaaggaggagttccattattccaaatagattttaaccaa-aaccaacattcctagcatgtctgtggaaaatgcaagcttccttgaggga |
197 |
Q |
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| T |
9148362 |
gcaaggatttttaaggaggagttccattattccaaatagattttaaccaagaaacaacattcctaacatgtctgtggaaaatgcaagcttccttgaggga |
9148263 |
T |
|
| Q |
198 |
caagttacaaataaaattttctttcctaacatcaagaggaagactacttgattgagggtaagcatgtttcaattcaattggaatatgccattgtcatcca |
297 |
Q |
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| T |
9148262 |
caagttacaaataaatttttctttcctaacatcaagaggaagactacttgattgagggtaagcatgtttcaattcaattggaatatgccattgtcatcca |
9148163 |
T |
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| Q |
298 |
ataagataattacaaacattagaattctaaaatttttgaatgtgatatgggatattcgtcagatggataagagaagttcaactccagttatgat |
391 |
Q |
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| T |
9148162 |
ataagataattacaaacattagaattcgaaaatttgtgaatgtgatatgggatattcgtcagatggataagaggagttcaactcccattatgat |
9148069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 9178610 - 9179003
Alignment:
| Q |
1 |
gattccttattgtacaacgaa-acattgtgggagtttaacaaccttttaatatgagat-gccatcaattggaattttattatgaatgagcctcaaaattc |
98 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| ||||| |
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| T |
9178610 |
gattccttattgtacaacgaacacattgtgggagtttaacaaccttttaatatgagattgccatctattggaattttattatgattgagcctccaaatta |
9178709 |
T |
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| Q |
99 |
gcaaggatttttaaggaggagttccattattccaaatagattttaaccaa-aaccaacattcctagcatgtctgtggaaaatgcaagcttccttgaggga |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9178710 |
gcaaggatttttaaggaggagttccattattccaaatagattttaaccaagaaacaacattcctaacatgtctgtggaaaatgcaagcttccttgaggga |
9178809 |
T |
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| Q |
198 |
caagttacaaataaaattttctttcctaacatcaagaggaagactacttgattgagggtaagcatgtttcaattcaattggaatatgccattgtcatcca |
297 |
Q |
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| T |
9178810 |
caagttacaaataaatttttctttcctaacatcaagaggaagactacttgattgagggtaagcatgtttcaattcaattggaatatgccattgtcatcca |
9178909 |
T |
|
| Q |
298 |
ataagataattacaaacattagaattctaaaatttttgaatgtgatatgggatattcgtcagatggataagagaagttcaactccagttatgat |
391 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
9178910 |
ataagataattacaaacattagaattcgaaaatttgtgaatgtgatatgggatattcgtcagatggataagaggagttcaactcccattatgat |
9179003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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