View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_15 (Length: 474)

Name: NF8511_low_15
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_15
NF8511_low_15
[»] chr7 (7 HSPs)
chr7 (20-461)||(44541407-44541848)
chr7 (119-168)||(29060731-29060780)
chr7 (119-167)||(24996676-24996724)
chr7 (119-160)||(42607088-42607129)
chr7 (119-167)||(24995859-24995907)
chr7 (119-166)||(32871134-32871181)
chr7 (119-160)||(42607812-42607853)
[»] chr5 (3 HSPs)
chr5 (108-461)||(472748-473096)
chr5 (119-160)||(4789527-4789568)
chr5 (109-165)||(1970509-1970565)
[»] chr1 (12 HSPs)
chr1 (114-254)||(36272453-36272593)
chr1 (114-254)||(6768024-6768164)
chr1 (187-261)||(37422470-37422544)
chr1 (119-168)||(48835089-48835138)
chr1 (119-166)||(4640535-4640582)
chr1 (119-166)||(4641756-4641803)
chr1 (114-160)||(11031433-11031479)
chr1 (114-160)||(11032219-11032265)
chr1 (114-160)||(47334900-47334946)
chr1 (119-160)||(38931321-38931362)
chr1 (119-160)||(41884229-41884270)
chr1 (114-178)||(38932110-38932174)
[»] chr2 (4 HSPs)
chr2 (117-254)||(23462410-23462547)
chr2 (114-159)||(5005464-5005509)
chr2 (114-204)||(32471941-32472031)
chr2 (124-205)||(43743795-43743876)
[»] chr6 (4 HSPs)
chr6 (140-248)||(23593852-23593960)
chr6 (119-248)||(8383930-8384059)
chr6 (192-248)||(8383236-8383292)
chr6 (126-227)||(24125986-24126087)
[»] chr3 (8 HSPs)
chr3 (119-168)||(33455773-33455822)
chr3 (119-165)||(49161803-49161849)
chr3 (117-146)||(26836351-26836380)
chr3 (114-159)||(41553348-41553393)
chr3 (114-179)||(43768028-43768092)
chr3 (119-160)||(51421675-51421716)
chr3 (119-167)||(33968188-33968236)
chr3 (114-178)||(51420863-51420927)
[»] chr8 (3 HSPs)
chr8 (119-160)||(37562302-37562343)
chr8 (170-261)||(6013026-6013117)
chr8 (114-179)||(42345396-42345461)
[»] chr4 (4 HSPs)
chr4 (125-167)||(34371475-34371517)
chr4 (119-160)||(25970113-25970154)
chr4 (114-179)||(39429227-39429292)
chr4 (126-227)||(47377531-47377632)


Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 20 - 461
Target Start/End: Complemental strand, 44541848 - 44541407
Alignment:
Q  20 ttatgcccatgctgatgttaggattgctaatgctcctagttctgctgacccgtggcttacaggaatctcttaatgtttttgatgatgcgattgatggcat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44541848 ttatgcccatgctgatgttaggattgctaatgctcctagttctgctgacccgtggcttacaggaatctcttaatgttcttgatgatgcgattgatggcat 44541749  T
Q  120 ttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactat 219  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||  ||||||||||||||||||||||||||    
T  44541748 ttagcatgggaaagtggaattgtttccgaccatgggaaagtattttttggccatcagattaaagagaatcaccaatcttattatagtatgcacacactat 44541649  T
Q  220 atctttcccaactttgtcttcaacctcacaatcatttctctctccttataactcactcacccaccacaagctgcctaaattgcaggatcaaaccaactat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  44541648 atctttcccaactttgtcttcaacctcacaatcatttctctctccttataactcactcacctaccacaagctgcctaaattgcaagatcaaaccaactat 44541549  T
Q  320 ggataatcatttcaacagcttgaatcacacaaagtgctcccaacattttattctctctttccatannnnnnnaattcaagtttcagtgacaaatgggtca 419  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  44541548 ggat-atcatttcaacagcttgaatcacacaaagtgctcctaacattttattctctctttccatatttttttaattcaagtttcagtgacaaatgggtca 44541450  T
Q  420 cta-ttttctctaaattgaccattgattttagtctgtgctcct 461  Q
    ||| ||||||||||||||||||||||||||||| |||| ||||    
T  44541449 ctatttttctctaaattgaccattgattttagtttgtgttcct 44541407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 29060780 - 29060731
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttta 168  Q
    |||||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  29060780 tttagcatgggaaaggggaattgtttcccaccatgggaaagtttttttta 29060731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 24996724 - 24996676
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttt 167  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  24996724 tttagcatgggaaaggggagttgtttcccaccatgggaaagtatttttt 24996676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 42607088 - 42607129
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagt 160  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  42607088 tttagcatgggaaaggggaattgtttcccaccatgggaaagt 42607129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 24995859 - 24995907
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttt 167  Q
    ||||| ||||||||||||| |||||||| ||||| ||||||||||||||    
T  24995859 tttagaatgggaaaggggagttgtttcccaccatgggaaagtatttttt 24995907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 32871181 - 32871134
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagtattttt 166  Q
    ||||||||||||| ||||| |||||||| ||||||||||||| |||||    
T  32871181 tttagcatgggaatggggagttgtttcccaccataggaaagttttttt 32871134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 42607853 - 42607812
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagt 160  Q
    |||||||||| ||||||||||||||||| | |||||||||||    
T  42607853 tttagcatggaaaaggggaattgtttcccatcataggaaagt 42607812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 108 - 461
Target Start/End: Complemental strand, 473096 - 472748
Alignment:
Q  108 gattgatggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagta 207  Q
    ||||| |||||||||  ||||||||||| | | |||||| ||||||| |||||||||||||||||||||||| || || | |||||||||||||||| |     
T  473096 gattggtggcatttaatatgggaaagggaagtcgtttcccaccatagaaaagtattttttagccatcagattaaagaggaccactgatcttattataatc 472997  T
Q  208 tgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctctcctt-ataactcactcacccaccacaagctgcctaaattgcagga 306  Q
    |||||||||||||||||| |||||||||||||||| || |||  ||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||    
T  472996 tgcacacactatatcttttccaactttgtcttcaa-ctaacagccatttctctctccttcataactcactcacccaccaccagctgcctaaattgcaaga 472898  T
Q  307 tcaaaccaactatggataatcatttcaacag-cttgaatcacacaaagtgctcccaacattttattctctctttccatannnnnnnaattcaagtttcag 405  Q
    |||||||||||||| || || |||||||||| ||||||||||||  ||||||| ||||||||||||||||||    |||       ||||||||||||||    
T  472897 tcaaaccaactatgaat-attatttcaacagccttgaatcacac--agtgctctcaacattttattctctct----atatttttttaattcaagtttcag 472805  T
Q  406 tgacaaatgggtcacta-ttttctctaaattgaccattgattttagtctgtgctcct 461  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||| |||| ||||    
T  472804 tgacaaatgggtcactatttttctctaaattgaccattaattttagtttgtgttcct 472748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 4789527 - 4789568
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagt 160  Q
    ||||||||||||||||||| |||||||| ||||| |||||||    
T  4789527 tttagcatgggaaaggggagttgtttcccaccatgggaaagt 4789568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 1970565 - 1970509
Alignment:
Q  109 attgatggcatttagcatgggaaaggggaattgtttccgaccataggaaagtatttt 165  Q
    |||| |||||||||||||||||| || || |||||||| ||||| ||||||| ||||    
T  1970565 attggtggcatttagcatgggaatggagagttgtttcccaccatgggaaagtttttt 1970509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 114 - 254
Target Start/End: Complemental strand, 36272593 - 36272453
Alignment:
Q  114 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcaca 213  Q
    |||||||||||||||||| ||| | |||||||| ||||| |||||||||||||| |||||| |||| || || || ||||||||||||||||| ||||||    
T  36272593 tggcatttagcatgggaatgggaacttgtttcccaccatgggaaagtattttttggccatctgattaaagaggattactgatcttattatagtctgcaca 36272494  T
Q  214 cactatatctttcccaactttgtcttcaacctcacaatcat 254  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  36272493 cactatatctttctcaactttgtcttcaacctcactatcat 36272453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 114 - 254
Target Start/End: Complemental strand, 6768164 - 6768024
Alignment:
Q  114 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcaca 213  Q
    |||||||||||||||||| ||| | || ||||| ||||| |||||||||||||| |||||| |||| || || || ||| ||||||||||||| ||||||    
T  6768164 tggcatttagcatgggaatgggaacttatttcccaccatgggaaagtattttttggccatctgattaaagaggattactaatcttattatagtctgcaca 6768065  T
Q  214 cactatatctttcccaactttgtcttcaacctcacaatcat 254  Q
    || |||||||||| ||||||||||||||||||||| |||||    
T  6768064 cattatatctttctcaactttgtcttcaacctcactatcat 6768024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 37422470 - 37422544
Alignment:
Q  187 atcactgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctc 261  Q
    ||||||| |||||||||||| |||| ||||| |||||||||  ||||| ||||||||||||| | ||| ||||||    
T  37422470 atcactggtcttattatagtctgcaaacactgtatctttccagactttatcttcaacctcactaccatctctctc 37422544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 48835138 - 48835089
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttta 168  Q
    |||||||||||||||||||||||||| | ||||| ||||||| |||||||    
T  48835138 tttagcatgggaaaggggaattgttttccaccatgggaaagtttttttta 48835089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 4640535 - 4640582
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagtattttt 166  Q
    |||||||||| ||||||||||||||||| ||||| |||||||| ||||    
T  4640535 tttagcatggtaaaggggaattgtttcccaccatgggaaagtaatttt 4640582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 4641803 - 4641756
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagtattttt 166  Q
    |||||||||||||||||||||||||||| ||||  |||||||| ||||    
T  4641803 tttagcatgggaaaggggaattgtttcccaccaagggaaagtaatttt 4641756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 11031433 - 11031479
Alignment:
Q  114 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagt 160  Q
    ||||||||| |||||||||||||||| |||||| ||||| |||||||    
T  11031433 tggcatttaacatgggaaaggggaatagtttcccaccatgggaaagt 11031479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 11032265 - 11032219
Alignment:
Q  114 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagt 160  Q
    ||||||||| |||||||||||||||| |||||| ||||| |||||||    
T  11032265 tggcatttaacatgggaaaggggaatagtttcccaccatgggaaagt 11032219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 47334946 - 47334900
Alignment:
Q  114 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagt 160  Q
    |||||||||| |||||||| |||| |||||||| |||||||||||||    
T  47334946 tggcatttagtatgggaaaagggagttgtttcccaccataggaaagt 47334900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 38931321 - 38931362
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagt 160  Q
    ||||||||| |||||||||||||||||| ||||| |||||||    
T  38931321 tttagcatgagaaaggggaattgtttcccaccatgggaaagt 38931362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 41884270 - 41884229
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagt 160  Q
    |||||||||| |||||| |||||||||| |||||||||||||    
T  41884270 tttagcatggaaaagggaaattgtttcccaccataggaaagt 41884229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 38932174 - 38932110
Alignment:
Q  114 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagat 178  Q
    ||||||||||||||||||| || | |||||| | |||||||||||||  |||||| |||| ||||    
T  38932174 tggcatttagcatgggaaaaggaagttgttttccaccataggaaagtcatttttaaccattagat 38932110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 117 - 254
Target Start/End: Original strand, 23462410 - 23462547
Alignment:
Q  117 catttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacac 216  Q
    |||||||||||| || ||| | |||||| | ||||| |||||||||||||| |||||| || | || || |||||||||||||||||||| |||||||||    
T  23462410 catttagcatggaaatgggaacttgttttctaccatgggaaagtattttttggccatctgactaaagaggatcactgatcttattatagtctgcacacac 23462509  T
Q  217 tatatctttcccaactttgtcttcaacctcacaatcat 254  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  23462510 tatatctttctcaactttgtcttcaacctcactatcat 23462547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 5005464 - 5005509
Alignment:
Q  114 tggcatttagcatgggaaaggggaattgtttccgaccataggaaag 159  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||    
T  5005464 tggcatttagcatgggaaaggggaattgtttcccatcatgggaaag 5005509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 32471941 - 32472031
Alignment:
Q  114 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattata 204  Q
    ||||||||| ||||||||||| | ||  ||||| ||||| ||||||| |||| || |||| ||||| ||| | | ||||||||||||||||    
T  32471941 tggcatttaacatgggaaaggtggatcctttcccaccatgggaaagttttttgtaaccattagattaaaatggaacactgatcttattata 32472031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 43743876 - 43743795
Alignment:
Q  124 catgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatag 205  Q
    ||||||||||| ||||  ||||| ||||| ||||| | ||||||| |||||||||||||| | | || |||||||| |||||    
T  43743876 catgggaaaggtgaatcctttcccaccatgggaaacttttttttaaccatcagatttaaagggaacattgatcttactatag 43743795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 140 - 248
Target Start/End: Complemental strand, 23593960 - 23593852
Alignment:
Q  140 tgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtctt 239  Q
    ||||||| ||||| |||||||||||||| ||  | ||| | || || ||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  23593960 tgtttcccaccatgggaaagtattttttggcggttagactaaagaggatcactgattttattatagtatgcatacactatatctttcccaactttgtctt 23593861  T
Q  240 caacctcac 248  Q
    |||||||||    
T  23593860 caacctcac 23593852  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 119 - 248
Target Start/End: Complemental strand, 8384059 - 8383930
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacacta 218  Q
    ||||||||||||||| ||| |||||||| ||||| | ||| ||||||||  |  | |||||||| || |||  |||||||||||| || |||||||||||    
T  8384059 tttagcatgggaaagtggagttgtttcccaccatggaaaaatattttttgacggttagatttaagaggatcgttgatcttattatggtctgcacacacta 8383960  T
Q  219 tatctttcccaactttgtcttcaacctcac 248  Q
    ||| ||||||||||||||||||||||||||    
T  8383959 tatatttcccaactttgtcttcaacctcac 8383930  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 8383236 - 8383292
Alignment:
Q  192 tgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcac 248  Q
    ||||||||||||| | | ||||||||||||||||||| |||||||| ||||||||||    
T  8383236 tgatcttattataatctacacacactatatctttccccactttgtcatcaacctcac 8383292  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 24125986 - 24126087
Alignment:
Q  126 tgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatcttt 225  Q
    |||||||||||| |||||||| ||||| |||||||  |||| |||||| |||||||| || | || | || |||||||||| |   |||||||||| |||    
T  24125986 tgggaaaggggagttgtttcccaccatgggaaagttattttcagccattagatttaagaggaacattaattttattatagtctatccacactatattttt 24126085  T
Q  226 cc 227  Q
    ||    
T  24126086 cc 24126087  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 33455822 - 33455773
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttta 168  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  33455822 tttagcatgggaaaggggaattgtttcccaccataggaaagtttttttta 33455773  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 49161849 - 49161803
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttt 165  Q
    |||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  49161849 tttagcatgggaaaggggaattgtttcccaccatgggaaagtttttt 49161803  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 26836351 - 26836380
Alignment:
Q  117 catttagcatgggaaaggggaattgtttcc 146  Q
    ||||||||||||||||||||||||||||||    
T  26836351 catttagcatgggaaaggggaattgtttcc 26836380  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 41553393 - 41553348
Alignment:
Q  114 tggcatttagcatgggaaaggggaattgtttccgaccataggaaag 159  Q
    ||||||||| ||||||||||| ||||| ||||| ||||||||||||    
T  41553393 tggcatttatcatgggaaaggtgaattatttcccaccataggaaag 41553348  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 43768028 - 43768092
Alignment:
Q  114 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatt 179  Q
    |||||||||||||||||| || || |||||||| ||||| ||||||| ||||||| |||| |||||    
T  43768028 tggcatttagcatgggaatggagagttgtttcccaccatgggaaagt-ttttttaaccattagatt 43768092  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 51421716 - 51421675
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagt 160  Q
    ||||||||| |||||||||||||||||| ||||| |||||||    
T  51421716 tttagcatgagaaaggggaattgtttcccaccatgggaaagt 51421675  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 33968188 - 33968236
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagtatttttt 167  Q
    ||||||||||||||||| | |||||||| ||||| ||||| ||||||||    
T  33968188 tttagcatgggaaagggaacttgtttcccaccatgggaaaatatttttt 33968236  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 51420863 - 51420927
Alignment:
Q  114 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagat 178  Q
    ||||||||||||||||||| || | |||||| | |||||||||||||  |||||| |||| ||||    
T  51420863 tggcatttagcatgggaaaaggaagttgttttccaccataggaaagtcatttttaaccattagat 51420927  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 37562302 - 37562343
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagt 160  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  37562302 tttagcatgggaaaggagaattgtttcccaccataggaaagt 37562343  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 6013026 - 6013117
Alignment:
Q  170 ccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatctttcccaactttgtcttcaacctcacaatcatttctctc 261  Q
    |||| ||||| || || ||||||  ||||||||||||||||| ||||  |||||||||  ||||| ||||||||||||| | ||| ||||||    
T  6013026 ccattagattaaagaggatcactagtcttattatagtatgcaaacacggtatctttccagactttatcttcaacctcactaccatctctctc 6013117  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 42345396 - 42345461
Alignment:
Q  114 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatt 179  Q
    |||||||||||||||||| || || |||||||| ||||| ||||||| ||||| | |||| |||||    
T  42345396 tggcatttagcatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattagatt 42345461  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 34371475 - 34371517
Alignment:
Q  125 atgggaaaggggaattgtttccgaccataggaaagtatttttt 167  Q
    |||||||||||||||||||||| ||||| ||||||| ||||||    
T  34371475 atgggaaaggggaattgtttcccaccatgggaaagtttttttt 34371517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 25970113 - 25970154
Alignment:
Q  119 tttagcatgggaaaggggaattgtttccgaccataggaaagt 160  Q
    ||||||||||||||||||| |||||||| ||||| |||||||    
T  25970113 tttagcatgggaaaggggagttgtttcccaccatgggaaagt 25970154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 39429227 - 39429292
Alignment:
Q  114 tggcatttagcatgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatt 179  Q
    |||||||||||||||||| || || |||||||| ||||| ||||||| ||||| | |||| |||||    
T  39429227 tggcatttagcatgggaatggagagttgtttcctaccatgggaaagtttttttcaaccattagatt 39429292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 47377632 - 47377531
Alignment:
Q  126 tgggaaaggggaattgtttccgaccataggaaagtattttttagccatcagatttaaaagaatcactgatcttattatagtatgcacacactatatcttt 225  Q
    |||||||||||| |||||||| ||||| |||||||  |||| |||||| |||||||| || | || | || |||||||||| |   |||||||||| |||    
T  47377632 tgggaaaggggagttgtttcccaccatgggaaagttattttcagccattagatttaagaggaacattaattttattatagtctatccacactatattttt 47377533  T
Q  226 cc 227  Q
    ||    
T  47377532 cc 47377531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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