View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_17 (Length: 467)
Name: NF8511_low_17
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 51039080 - 51039279
Alignment:
| Q |
17 |
atgactttctttggacaagacttcaaaatcacctgctataaaattgttaatggattaaacaagcaaatgaagaagaaaaacgaaaatgagtgttgaaact |
116 |
Q |
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| T |
51039080 |
atgactttctttggacaagacttcaaaatcacctgctataaaattgttaatg-attaaacaagcaaatgaagaagaaaatcgaaaatgagtgttgaaact |
51039178 |
T |
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| Q |
117 |
tgaaaacctcgtcaactgatggaggagagttatgcacaactggttttgcaacttggacggtcaacggaactgaaacaaacaaatttcatttctagaagaa |
216 |
Q |
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| T |
51039179 |
tgaaaacctcgtcaactgatggaggagagttatgtacaactggttttgcaacttggacggtcaacggaactgaaacaaacaaatttcatttctagaagaa |
51039278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 264 - 459
Target Start/End: Original strand, 51039295 - 51039490
Alignment:
| Q |
264 |
aggtcttctgctacggaggatttgaagaaactctgatcggaacttgatctgagcttcaatggcttccttttcttccattttggaattaacttttatgaca |
363 |
Q |
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| T |
51039295 |
aggttttctgctacggaggatttgaagaaactctgattggaacttgatctgagcttcaatggcttccttttcttccattttggaattaacttttgtgaca |
51039394 |
T |
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| Q |
364 |
cttattttctctttgtttatcaatcactcggtccctttttataaacactagttgcatgttttaaatatattaagaaaaattaattaatagtataat |
459 |
Q |
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| T |
51039395 |
cttattttctctttgtttatcaatcactcggtccctttttataaacactagttgcatgttttaaatatattaagaaaaaataattaatagtataat |
51039490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 255 - 344
Target Start/End: Original strand, 51045559 - 51045648
Alignment:
| Q |
255 |
accttgaggaggtcttctgctacggaggatttgaagaaactctgatcggaacttgatctgagcttcaatggcttccttttcttccatttt |
344 |
Q |
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| T |
51045559 |
accttgaggaggtcgtctgctacggaggatttgaagaaactctgatcggaatttgctctgttcatcaatggcgccattttcttccatttt |
51045648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 51045417 - 51045481
Alignment:
| Q |
133 |
tgatggaggagagttatgcacaactggttttgcaacttggacggtcaacggaactgaaacaaaca |
197 |
Q |
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| T |
51045417 |
tgatggaggagagttatgcaccactggttttgcgacttggacggttaaaggaactgaaacaaaca |
51045481 |
T |
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