View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_18 (Length: 466)

Name: NF8511_low_18
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_18
NF8511_low_18
[»] chr8 (14 HSPs)
chr8 (146-440)||(35430936-35431233)
chr8 (287-399)||(39820436-39820547)
chr8 (18-81)||(35430809-35430872)
chr8 (344-403)||(1676715-1676774)
chr8 (347-412)||(13009493-13009558)
chr8 (349-399)||(13845241-13845291)
chr8 (350-403)||(3658150-3658203)
chr8 (287-353)||(36450694-36450759)
chr8 (289-359)||(44067574-44067644)
chr8 (284-329)||(13436907-13436952)
chr8 (347-412)||(40063945-40064010)
chr8 (347-408)||(44067514-44067575)
chr8 (287-403)||(30067968-30068084)
chr8 (287-359)||(33389295-33389367)
[»] chr7 (12 HSPs)
chr7 (285-403)||(23751903-23752020)
chr7 (347-412)||(29812664-29812729)
chr7 (300-400)||(12278841-12278941)
chr7 (350-408)||(4017797-4017855)
chr7 (350-412)||(22683758-22683820)
chr7 (347-403)||(23930222-23930278)
chr7 (347-401)||(17780084-17780138)
chr7 (285-359)||(21138929-21139002)
chr7 (350-408)||(38804558-38804616)
chr7 (286-398)||(21880160-21880272)
chr7 (347-408)||(43249991-43250052)
chr7 (347-411)||(7133278-7133342)
[»] chr5 (10 HSPs)
chr5 (289-403)||(7997108-7997222)
chr5 (347-412)||(39695999-39696064)
chr5 (347-399)||(43554528-43554580)
chr5 (357-408)||(42469219-42469270)
chr5 (291-388)||(36577616-36577717)
chr5 (360-414)||(2577193-2577247)
chr5 (349-411)||(18607099-18607161)
chr5 (349-399)||(25863211-25863261)
chr5 (282-406)||(19737416-19737541)
chr5 (349-398)||(31264446-31264495)
[»] chr4 (14 HSPs)
chr4 (285-412)||(3144585-3144717)
chr4 (287-401)||(39507059-39507173)
chr4 (347-408)||(20743278-20743339)
chr4 (287-358)||(17876214-17876285)
chr4 (347-408)||(23386143-23386205)
chr4 (347-408)||(24343505-24343566)
chr4 (347-399)||(31243548-31243600)
chr4 (352-408)||(46971904-46971960)
chr4 (357-397)||(49659533-49659573)
chr4 (347-397)||(6273953-6274003)
chr4 (354-403)||(34515881-34515930)
chr4 (355-412)||(47191001-47191058)
chr4 (360-400)||(7424676-7424716)
chr4 (347-399)||(53968553-53968605)
[»] chr6 (14 HSPs)
chr6 (347-408)||(6389741-6389802)
chr6 (290-403)||(12235462-12235575)
chr6 (347-403)||(26247429-26247485)
chr6 (287-403)||(34446568-34446690)
chr6 (347-400)||(17168463-17168516)
chr6 (353-397)||(2153893-2153937)
chr6 (288-398)||(33419181-33419292)
chr6 (346-403)||(12086344-12086401)
chr6 (344-413)||(13689190-13689259)
chr6 (347-400)||(19602181-19602234)
chr6 (351-401)||(6299517-6299567)
chr6 (351-401)||(6306327-6306377)
chr6 (358-403)||(7625125-7625170)
chr6 (376-413)||(14819654-14819691)
[»] chr3 (22 HSPs)
chr3 (344-408)||(15864831-15864895)
chr3 (289-408)||(24204983-24205102)
chr3 (349-408)||(25892458-25892517)
chr3 (288-401)||(25365467-25365580)
chr3 (299-399)||(26665143-26665243)
chr3 (287-403)||(21211291-21211413)
chr3 (352-398)||(1830351-1830397)
chr3 (350-400)||(34189433-34189483)
chr3 (284-399)||(3730105-3730217)
chr3 (347-400)||(14223853-14223906)
chr3 (348-408)||(8903430-8903489)
chr3 (347-403)||(12704657-12704713)
chr3 (278-356)||(7949015-7949092)
chr3 (287-329)||(17005548-17005590)
chr3 (350-400)||(25326432-25326482)
chr3 (349-403)||(25652033-25652087)
chr3 (347-401)||(52369780-52369834)
chr3 (353-406)||(20691319-20691372)
chr3 (347-400)||(25074795-25074848)
chr3 (288-329)||(25211607-25211648)
chr3 (347-400)||(27903638-27903691)
chr3 (344-412)||(12100264-12100331)
[»] scaffold0199 (1 HSPs)
scaffold0199 (344-403)||(1952-2011)
[»] chr2 (14 HSPs)
chr2 (347-400)||(23354652-23354705)
chr2 (347-412)||(25544475-25544540)
chr2 (350-411)||(38919201-38919262)
chr2 (344-401)||(12748689-12748746)
chr2 (347-400)||(23354995-23355048)
chr2 (347-400)||(24011042-24011095)
chr2 (287-353)||(30563474-30563540)
chr2 (350-400)||(37986785-37986835)
chr2 (310-400)||(18570978-18571068)
chr2 (345-399)||(22085011-22085066)
chr2 (350-400)||(10535762-10535812)
chr2 (347-409)||(11308004-11308065)
chr2 (287-400)||(34006930-34007044)
chr2 (347-400)||(19573984-19574037)
[»] chr1 (12 HSPs)
chr1 (348-412)||(6573983-6574047)
chr1 (285-400)||(19637774-19637889)
chr1 (347-403)||(42004947-42005003)
chr1 (350-408)||(48415728-48415787)
chr1 (349-403)||(6936402-6936456)
chr1 (287-413)||(40747707-40747839)
chr1 (365-412)||(23440004-23440051)
chr1 (353-398)||(12040688-12040734)
chr1 (284-400)||(7988388-7988504)
chr1 (347-403)||(21145469-21145526)
chr1 (350-402)||(11634127-11634179)
chr1 (287-403)||(22794018-22794134)
[»] scaffold0778 (1 HSPs)
scaffold0778 (351-408)||(4404-4461)
[»] scaffold0598 (1 HSPs)
scaffold0598 (347-403)||(8053-8109)


Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 146 - 440
Target Start/End: Original strand, 35430936 - 35431233
Alignment:
Q  146 gagtttgagcatagatttagaattgagcnnnnnnn--accgtctcatatgtctgtaatgaaatgaattttctttctt-aaggcattatgttatgtataat 242  Q
    ||||||||||||||||||||||||||||         || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35430936 gagtttgagcatagatttagaattgagctttttttttactgtctcatatgtctgtaatgaaatgaattttctttctttaaggcattatgttatgtataat 35431035  T
Q  243 tttctaactatcataattgtgaccttcacgctacaggttagaatctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcg 342  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||    
T  35431036 tttctaactatcataattgtgaccttcacgatacaggttagaatctatgaagcacagacactttttggattaggggtgtcctggtgttggatatgcatcg 35431135  T
Q  343 atgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtctttatctgtattgtatatgatgtttgtg 440  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||| | ||||| |||||| |||||| ||||    
T  35431136 atgtccgacacgacacctatgattacactaaaatatgtcattttctcaaattattatccgtttcggtatctctgtctgtgttgtatctgatgtctgtg 35431233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 287 - 399
Target Start/End: Complemental strand, 39820547 - 39820436
Alignment:
Q  287 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcatttt 386  Q
    |||||||||||  |||||||| |||||||| |||||| | ||| ||| |||| ||| ||||||||||||||||||||||||||||||| |||||||||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcatttt 39820449  T
Q  387 cttaaattattat 399  Q
    || ||||||||||    
T  39820448 ctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 35430809 - 35430872
Alignment:
Q  18 tttatgtatgtcattctttagcatgaattgttttaactaaaacactgctatttagaagattgga 81  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35430809 tttatgtatgtcattcgttagcatgaattgttttaactaaaacactgctatttagaagattgga 35430872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 403
Target Start/End: Complemental strand, 1676774 - 1676715
Alignment:
Q  344 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 403  Q
    ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  1676774 tgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgt 1676715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 412
Target Start/End: Original strand, 13009493 - 13009558
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 412  Q
    |||||||||||| ||||||||||||||| |||||  |||||| |||||||||||||| ||||||||    
T  13009493 ccgacacgacacttatgattacactaaattatattgttttctcaaattattatccgtgtcggtgtc 13009558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 13845291 - 13845241
Alignment:
Q  349 gacacgacacctatgattacactaaaatatatcattttcttaaattattat 399  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  13845291 gacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 3658203 - 3658150
Alignment:
Q  350 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 403  Q
    |||||||||||||||||||||| || || || ||||||| ||||||||||||||    
T  3658203 acacgacacctatgattacactgaactacattattttctcaaattattatccgt 3658150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 36450694 - 36450759
Alignment:
Q  287 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac 353  Q
    |||||||||||| ||||| || |||||||| |||||||||||| ||| |||| ||| ||||||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtcg-tgtccgacac 36450759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 44067644 - 44067574
Alignment:
Q  289 atgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacc 359  Q
    |||||||||  ||||| || | |||||| |||||||||||| ||| |||||||  ||||||||||||||||    
T  44067644 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacacgacacc 44067574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 13436907 - 13436952
Alignment:
Q  284 aatctatgaagcacaaacacttcttggattaggggtgtcctggtgt 329  Q
    ||||||||||||||| ||||| ||||||||||| |||||| |||||    
T  13436907 aatctatgaagcacagacactccttggattaggcgtgtcccggtgt 13436952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 412
Target Start/End: Complemental strand, 40064010 - 40063945
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 412  Q
    |||||||||| |||||||||||| | || ||| ||||||||| ||||||||||  || ||||||||    
T  40064010 ccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattattggtgtcggtgtc 40063945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 44067575 - 44067514
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 408  Q
    |||||||||||| ||| ||||||||  | ||| ||||||||| |||||||||||||| ||||    
T  44067575 ccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcgg 44067514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 403
Target Start/End: Original strand, 30067968 - 30068084
Alignment:
Q  287 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcatttt 386  Q
    |||||||||||  |||||  | |||||||| ||||||  |||| ||| || | ||| | |||||| || |||||| ||||| ||| || ||| |||||||    
T  30067968 ctatgaagcacggacactcatcggattaggtgtgtcccagtgtcggacacacgtcggtatccgactcggcacctacgattatactgaattatgtcatttt 30068067  T
Q  387 cttaaattattatccgt 403  Q
    || ||||||||||||||    
T  30068068 ctcaaattattatccgt 30068084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 359
Target Start/End: Original strand, 33389295 - 33389367
Alignment:
Q  287 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacc 359  Q
    |||||||||||  ||||||||||||||||| || |||  |||| ||| ||| |||| ||| ||||||||||||    
T  33389295 ctatgaagcaccgacacttcttggattaggtgtatcccagtgtcggacacgtatcggtgttcgacacgacacc 33389367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 285 - 403
Target Start/End: Complemental strand, 23752020 - 23751903
Alignment:
Q  285 atctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcatt 384  Q
    |||||||||||||| |||||| | |||||||| |||||| | |||  || |||| ||| ||||||||||||||||||||||||||||||| |||||||||    
T  23752020 atctatgaagcacagacacttatcggattaggcgtgtcccg-tgtctgacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcatt 23751922  T
Q  385 ttcttaaattattatccgt 403  Q
    || | ||||||||||||||    
T  23751921 ttatcaaattattatccgt 23751903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 347 - 412
Target Start/End: Original strand, 29812664 - 29812729
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 412  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||  ||||||||    
T  29812664 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcggtgtc 29812729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 400
Target Start/End: Complemental strand, 12278941 - 12278841
Alignment:
Q  300 acacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattat 399  Q
    ||||| || |||||||| |||||| |||||  || |||| | | ||||||||||||||| ||| |||||||| || ||| ||||||||||||||||||||    
T  12278941 acactcctaggattaggtgtgtcccggtgtcagacacgcgttggtgtccgacacgacacatataattacactgaattatgtcattttcttaaattattat 12278842  T
Q  400 c 400  Q
    |    
T  12278841 c 12278841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 4017797 - 4017855
Alignment:
Q  350 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 408  Q
    ||||||||| ||||||||||||||| |||||| |||||| |||||||||||||| ||||    
T  4017797 acacgacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcgg 4017855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 412
Target Start/End: Original strand, 22683758 - 22683820
Alignment:
Q  350 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 412  Q
    ||||||||||||||||| |||| || |||||||| |||| |||||||||||||| ||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatccgtctcggtgtc 22683820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 23930278 - 23930222
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 403  Q
    ||||||| ||||||||||||||||| || ||| ||||||||| |||||| |||||||    
T  23930278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattactatccgt 23930222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 17780084 - 17780138
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatcc 401  Q
    |||||||||||||||| ||||||   || ||| ||||||||||||||||||||||    
T  17780084 ccgacacgacacctattattacatagaattatgtcattttcttaaattattatcc 17780138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 359
Target Start/End: Original strand, 21138929 - 21139002
Alignment:
Q  285 atctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacc 359  Q
    ||||||||||||| |||||| | | ||||| | |||||||||||| ||| ||| ||| |||||||||||||||||    
T  21138929 atctatgaagcacgaacactcccttgattaagcgtgtcctggtgtcggacacgtatc-atgtccgacacgacacc 21139002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 38804558 - 38804616
Alignment:
Q  350 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 408  Q
    ||||||||||||||||||| ||  | ||| ||||||||| |||||||||||||| ||||    
T  38804558 acacgacacctatgattaccctggattatgtcattttctgaaattattatccgtgtcgg 38804616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 398
Target Start/End: Complemental strand, 21880272 - 21880160
Alignment:
Q  286 tctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgaca-cgacacctatgattacactaaaatatatcatt 384  Q
    ||||||||||||  |||||||| |||||||| |||||||||||| ||| | |  ||| ||||||||| |||||| | | |||||||| || ||| | |||    
T  21880272 tctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcg-tgtccgacaccgacacttgtaattacactgaattatgtaatt 21880174  T
Q  385 ttcttaaattatta 398  Q
    |||| |||||||||    
T  21880173 ttctcaaattatta 21880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 43250052 - 43249991
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 408  Q
    |||||||||||| ||| ||||||||  | ||| ||||||||| |||||||||||||| ||||    
T  43250052 ccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcgg 43249991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 411
Target Start/End: Original strand, 7133278 - 7133342
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgt 411  Q
    |||||||  |||||||||||||||| || ||| ||||||||| ||||||| ||| || |||||||    
T  7133278 ccgacacaccacctatgattacactgaattatgtcattttctcaaattatcatctgtgtcggtgt 7133342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 403
Target Start/End: Original strand, 7997108 - 7997222
Alignment:
Q  289 atgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttct 388  Q
    ||||||||||||||||||| | |||||| |||||||| ||| ||| |||| ||  ||||||||||||||| ||| ||||||||  | |||||||||||||    
T  7997108 atgaagcacaaacacttctcgaattaggtgtgtcctgatgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatatcattttct 7997207  T
Q  389 taaattattatccgt 403  Q
     ||||||||||||||    
T  7997208 caaattattatccgt 7997222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 347 - 412
Target Start/End: Original strand, 39695999 - 39696064
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 412  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||| || || ||||||||    
T  39695999 ccgacacgacacctatgattacactaaattatatcattttctcaaattattgtcggtgtcggtgtc 39696064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 43554580 - 43554528
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattat 399  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  43554580 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 408
Target Start/End: Complemental strand, 42469270 - 42469219
Alignment:
Q  357 acctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 408  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatccgtgtcgg 42469219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 388
Target Start/End: Original strand, 36577616 - 36577717
Alignment:
Q  291 gaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtc-----cgacacgacacctatgattacactaaaatatatcattt 385  Q
    |||||||| ||||||||||||||||| || ||| | ||| |||||||||||| ||||     ||||||||||| ||| |||| |||||| ||||||||||    
T  36577616 gaagcacagacacttcttggattaggcgtatcccg-tgtcggatacgcatcggtgtcgacaccgacacgacacatataattatactaaattatatcattt 36577714  T
Q  386 tct 388  Q
    |||    
T  36577715 tct 36577717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 2577193 - 2577247
Alignment:
Q  360 tatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtctt 414  Q
    ||||||||||||||| ||| ||||||||| ||||||||||| || ||||| ||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgtcggtttctt 2577247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 18607099 - 18607161
Alignment:
Q  349 gacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgt 411  Q
    ||||||||||||||||||||| | || ||| | ||||||| |||||||||||| | |||||||    
T  18607099 gacacgacacctatgattacattgaattatgttattttctcaaattattatccatgtcggtgt 18607161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 25863261 - 25863211
Alignment:
Q  349 gacacgacacctatgattacactaaaatatatcattttcttaaattattat 399  Q
    |||||||||| ||| |||||||| || ||||||||||||| ||||||||||    
T  25863261 gacacgacacttataattacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 406
Target Start/End: Original strand, 19737416 - 19737541
Alignment:
Q  282 agaatctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgaca-cgacacctatgattacactaaaatatat 380  Q
    |||| |||||||||||||||||| ||  ||||||  ||||| |||||| |||||| ||| | ||||  ||| |||||| ||||||| || | || ||| |    
T  19737416 agaagctatgaagcacaaacactcctcagattagatgtgtcttggtgtcggatacacattggtgtcaaacaccgacacatatgattgcattgaattatgt 19737515  T
Q  381 cattttcttaaattattatccgtttc 406  Q
     ||||||| ||||||||||| |||||    
T  19737516 aattttctcaaattattatcggtttc 19737541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  349 gacacgacacctatgattacactaaaatatatcattttcttaaattatta 398  Q
    |||||||||| |||||||||||| || ||| ||||||||| |||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 285 - 412
Target Start/End: Original strand, 3144585 - 3144717
Alignment:
Q  285 atctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtc------cgacacgacacctatgattacactaaaatat 378  Q
    |||||||||||||  |||||||| |||||||| ||||| | |||||||| |||| | | ||||      ||||||||||||||||||||||||||| |||    
T  3144585 atctatgaagcacggacacttctcggattaggtgtgtc-tcgtgttggacacgcgttggtgtctgacaccgacacgacacctatgattacactaaattat 3144683  T
Q  379 atcattttcttaaattattatccgtttcggtgtc 412  Q
    |||||||||| |||||||||||||| | ||||||    
T  3144684 atcattttctgaaattattatccgtgtaggtgtc 3144717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 287 - 401
Target Start/End: Original strand, 39507059 - 39507173
Alignment:
Q  287 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcatttt 386  Q
    ||||||||||  |||||| || ||| |||| |||||  ||||| ||| ||| |||  |||||||||  ||||||||||||||||| || |||||||||||    
T  39507059 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacataacacctatgattacacttaattatatcatttt 39507158  T
Q  387 cttaaattattatcc 401  Q
    | |||||||||||||    
T  39507159 cataaattattatcc 39507173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 408
Target Start/End: Original strand, 20743278 - 20743339
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 408  Q
    ||||||| ||||||||||||||||| || ||| ||||||||| |||||||||||||| ||||    
T  20743278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcgg 20743339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 358
Target Start/End: Complemental strand, 17876285 - 17876214
Alignment:
Q  287 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacac 358  Q
    |||||||||||| ||||| ||||||||||| |||||||||||| ||| | || ||| |||| ||||||||||    
T  17876285 ctatgaagcacagacactccttggattaggtgtgtcctggtgtcggacaagcgtcggtgtctgacacgacac 17876214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 23386205 - 23386143
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatca-ttttcttaaattattatccgtttcgg 408  Q
    |||||| ||||||||||||||||||||| ||||||| |||| ||||||||| |||||| ||||    
T  23386205 ccgacatgacacctatgattacactaaattatatcattttttttaaattatcatccgtatcgg 23386143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 24343566 - 24343505
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 408  Q
    |||||||||||||||| |||||||| || ||| | ||||||| |||||||||||||| ||||    
T  24343566 ccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcgg 24343505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 399
Target Start/End: Original strand, 31243548 - 31243600
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattat 399  Q
    |||||| |||||||||||||||||| || ||| ||||||||| ||||||||||    
T  31243548 ccgacatgacacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 408
Target Start/End: Original strand, 46971904 - 46971960
Alignment:
Q  352 acgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 408  Q
    |||||||||||||| ||| |||||||| ||||| ||| |||||||||||||| ||||    
T  46971904 acgacacctatgataacagtaaaatatgtcattatctcaaattattatccgtgtcgg 46971960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 49659533 - 49659573
Alignment:
Q  357 acctatgattacactaaaatatatcattttcttaaattatt 397  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
T  49659533 acctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 397
Target Start/End: Complemental strand, 6274003 - 6273953
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattatt 397  Q
    ||||||||||  |||| ||||||||||| ||||||||||||| ||||||||    
T  6274003 ccgacacgacgactataattacactaaattatatcattttctcaaattatt 6273953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 403
Target Start/End: Original strand, 34515881 - 34515930
Alignment:
Q  354 gacacctatgattacactaaaatatatcattttcttaaattattatccgt 403  Q
    |||||||||| ||||||| || ||| |||||||||| |||||||||||||    
T  34515881 gacacctatgtttacactgaattatgtcattttcttgaattattatccgt 34515930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 412
Target Start/End: Original strand, 47191001 - 47191058
Alignment:
Q  355 acacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 412  Q
    ||||||| |||||||||||| ||| ||||||||  |||||||||||| | ||||||||    
T  47191001 acacctaggattacactaaattatgtcattttcgcaaattattatccatgtcggtgtc 47191058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 400
Target Start/End: Complemental strand, 7424716 - 7424676
Alignment:
Q  360 tatgattacactaaaatatatcattttcttaaattattatc 400  Q
    |||||||||||| || ||||| |||||||||||||||||||    
T  7424716 tatgattacactcaattatattattttcttaaattattatc 7424676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 53968605 - 53968553
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattat 399  Q
    ||||||||||| |||||||  |||| || ||| ||||||||||||||||||||    
T  53968605 ccgacacgacatctatgatatcactgaattatgtcattttcttaaattattat 53968553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 347 - 408
Target Start/End: Complemental strand, 6389802 - 6389741
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 408  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||    
T  6389802 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcgg 6389741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 403
Target Start/End: Original strand, 12235462 - 12235575
Alignment:
Q  290 tgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttctt 389  Q
    ||||||||  |||||| ||||||||||||||||| ||||  ||| || | ||| |||| ||||||||||||||||||||||| || ||| |||||||||     
T  12235462 tgaagcacggacactttttggattaggggtgtcccggtgccggacacacgtcggtgtcggacacgacacctatgattacactgaattatgtcattttctc 12235561  T
Q  390 aaattattatccgt 403  Q
     |||||||||||||    
T  12235562 taattattatccgt 12235575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 26247485 - 26247429
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 403  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  26247485 ccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatccgt 26247429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 287 - 403
Target Start/End: Complemental strand, 34446690 - 34446568
Alignment:
Q  287 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgt------ccgacacgacacctatgattacactaaaatatat 380  Q
    |||||||||||  ||||| ||||||||||| ||||||  ||||  ||||||| ||| |||      ||||||||||||||||||||||||| || ||| |    
T  34446690 ctatgaagcacggacactccttggattaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacctatgattacactgaattatgt 34446591  T
Q  381 cattttcttaaattattatccgt 403  Q
    |||||||| ||||||||||||||    
T  34446590 cattttctcaaattattatccgt 34446568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 17168463 - 17168516
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 400  Q
    |||||||||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  17168463 ccgacacgacacctattattacactaaattatatcattttctcaaattattatc 17168516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 397
Target Start/End: Original strand, 2153893 - 2153937
Alignment:
Q  353 cgacacctatgattacactaaaatatatcattttcttaaattatt 397  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||    
T  2153893 cgacacctataattacactaaattatatcattttcttaaattatt 2153937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 398
Target Start/End: Complemental strand, 33419292 - 33419181
Alignment:
Q  288 tatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgaca-cgacacctatgattacactaaaatatatcatttt 386  Q
    ||||||||||||| |||||||||||||||  ||||||||||||||| |||| | | |||| |||| | |||| ||| |||||| | || ||||||| |||    
T  33419292 tatgaagcacaaatacttcttggattaggcatgtcctggtgttggacacgcgttggtgtctgacaccaacacatataattacattgaattatatcaattt 33419193  T
Q  387 cttaaattatta 398  Q
     | |||||||||    
T  33419192 ttcaaattatta 33419181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 346 - 403
Target Start/End: Original strand, 12086344 - 12086401
Alignment:
Q  346 tccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 403  Q
    |||||||||||||||||||||| ||| || ||| ||||| ||| ||||||||||||||    
T  12086344 tccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgt 12086401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 344 - 413
Target Start/End: Original strand, 13689190 - 13689259
Alignment:
Q  344 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtct 413  Q
    |||||||||||| ||||||||||||| | |||| | | ||||||| ||||||||||| || |||||||||    
T  13689190 tgtccgacacgatacctatgattacattgaaatttgttattttctcaaattattatctgtgtcggtgtct 13689259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 19602181 - 19602234
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 400  Q
    ||||||| | ||||||||||||||| || ||||||||||||| |||||||||||    
T  19602181 ccgacacaatacctatgattacactgaattatatcattttctcaaattattatc 19602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 6299567 - 6299517
Alignment:
Q  351 cacgacacctatgattacactaaaatatatcattttcttaaattattatcc 401  Q
    |||||||||||| |||||| | || ||||||||||||| ||||||||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattatcc 6299517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 401
Target Start/End: Complemental strand, 6306377 - 6306327
Alignment:
Q  351 cacgacacctatgattacactaaaatatatcattttcttaaattattatcc 401  Q
    |||||||||||| |||||| | || ||||||||||||| ||||||||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattatcc 6306327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 7625170 - 7625125
Alignment:
Q  358 cctatgattacactaaaatatatcattttcttaaattattatccgt 403  Q
    ||||| |||| |||||| ||||||||||||| ||||||||||||||    
T  7625170 cctataattatactaaattatatcattttctcaaattattatccgt 7625125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 413
Target Start/End: Complemental strand, 14819691 - 14819654
Alignment:
Q  376 tatatcattttcttaaattattatccgtttcggtgtct 413  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  14819691 tatatcagtttcttaaattattatccgtgtcggtgtct 14819654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 15864895 - 15864831
Alignment:
Q  344 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 408  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| ||||    
T  15864895 tgtccgacacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcgg 15864831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 408
Target Start/End: Original strand, 24204983 - 24205102
Alignment:
Q  289 atgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttct 388  Q
    |||||||||  ||||| || | |||||| |||||||||||| ||| |||| ||  ||||||||||||||| ||| ||||||||  | ||| |||||||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatgtcattttct 24205082  T
Q  389 taaattattatccgtttcgg 408  Q
     |||||||||||||| ||||    
T  24205083 caaattattatccgtgtcgg 24205102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 349 - 408
Target Start/End: Complemental strand, 25892517 - 25892458
Alignment:
Q  349 gacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 408  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||    
T  25892517 gacacgacacctatgattacactgaattatatcattttcttaaattattatttgtttcgg 25892458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 401
Target Start/End: Complemental strand, 25365580 - 25365467
Alignment:
Q  288 tatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttc 387  Q
    ||||||||||| ||| | ||  ||||||| |||||||||||| | | || ||||| ||||||||||||||| |||||||||||  || ||| |||| |||    
T  25365580 tatgaagcacatacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgtccgacacgacacttatgattacaccgaattatgtcatattc 25365481  T
Q  388 ttaaattattatcc 401  Q
    | ||||||||||||    
T  25365480 tcaaattattatcc 25365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 399
Target Start/End: Complemental strand, 26665243 - 26665143
Alignment:
Q  299 aacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttcttaaattatta 398  Q
    |||||| |||| ||||||||||| ||||||| ||| |||| ||| ||||||||||||| ||||| |||||| | ||  |  ||||||||| |||||||||    
T  26665243 aacactccttgaattaggggtgttctggtgtcggacacgcttcggtgtccgacacgacgcctataattacagtgaatcacgtcattttctcaaattatta 26665144  T
Q  399 t 399  Q
    |    
T  26665143 t 26665143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 403
Target Start/End: Complemental strand, 21211413 - 21211291
Alignment:
Q  287 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtc------cgacacgacacctatgattacactaaaatatat 380  Q
    |||||||||||||||||| || |||||||| ||||||  |||| ||| |||| ||| ||||      |||||||||||| || |||||||| || ||| |    
T  21211413 ctatgaagcacaaacactcctcggattaggagtgtcccagtgtcggacacgcgtcggtgtcgaacaccgacacgacacccataattacactgaactatgt 21211314  T
Q  381 cattttcttaaattattatccgt 403  Q
     ||||||| ||||||||||||||    
T  21211313 aattttctcaaattattatccgt 21211291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 398
Target Start/End: Complemental strand, 1830397 - 1830351
Alignment:
Q  352 acgacacctatgattacactaaaatatatcattttcttaaattatta 398  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||    
T  1830397 acgacacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 34189483 - 34189433
Alignment:
Q  350 acacgacacctatgattacactaaaatatatcattttcttaaattattatc 400  Q
    |||||||||||| ||||||||| |||||| ||||||||| |||||||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatc 34189433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 284 - 399
Target Start/End: Original strand, 3730105 - 3730217
Alignment:
Q  284 aatctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcat 383  Q
    |||||||||||||   ||||| || |||||||| |||||| ||||   || | |||| | |||| ||||||||||||||||||||||| || ||| ||||    
T  3730105 aatctatgaagcatggacactcctcggattaggtgtgtcccggtg---gacatgcattggtgtcagacacgacacctatgattacactgaattatgtcat 3730201  T
Q  384 tttcttaaattattat 399  Q
    | ||| ||||||||||    
T  3730202 tatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 14223853 - 14223906
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 400  Q
    |||||||||||| ||||| ||||||||| |||||| |||||| |||||||||||    
T  14223853 ccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatc 14223906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 408
Target Start/End: Complemental strand, 8903489 - 8903430
Alignment:
Q  348 cgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 408  Q
    ||||||||||||||| |||||||| |||||| ||||||||| ||| |||||||||| ||||    
T  8903489 cgacacgacacctataattacact-aaatatgtcattttctcaaaatattatccgtgtcgg 8903430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 12704657 - 12704713
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 403  Q
    ||||||||||||||||||||||| | || ||| ||||||| | ||||||||||||||    
T  12704657 ccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgt 12704713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 356
Target Start/End: Complemental strand, 7949092 - 7949015
Alignment:
Q  278 ggttagaatctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgac 356  Q
    ||||| ||||| ||||||||||| |||  | | |||||| |||||||||||||||||||  ||| ||||||||||||||    
T  7949092 ggttataatctctgaagcacaaatactcatcgtattaggtgtgtcctggtgttggatacaaatc-atgtccgacacgac 7949015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 17005548 - 17005590
Alignment:
Q  287 ctatgaagcacaaacacttcttggattaggggtgtcctggtgt 329  Q
    |||||||||||||||||| || ||||||| |||||||||||||    
T  17005548 ctatgaagcacaaacactcctcggattagaggtgtcctggtgt 17005590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 25326482 - 25326432
Alignment:
Q  350 acacgacacctatgattacactaaaatatatcattttcttaaattattatc 400  Q
    |||||||| |||| ||||||||||| ||||| ||||| |||||||||||||    
T  25326482 acacgacatctataattacactaaattatattatttttttaaattattatc 25326432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 403
Target Start/End: Original strand, 25652033 - 25652087
Alignment:
Q  349 gacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 403  Q
    ||||| |||||||| | |||||| || ||||||||||||| ||||||||||||||    
T  25652033 gacacaacacctataactacactgaattatatcattttctcaaattattatccgt 25652087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 52369834 - 52369780
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatcc 401  Q
    ||||||||||||||||||||||| | || ||| | ||||||| ||||||||||||    
T  52369834 ccgacacgacacctatgattacattgaattatgtaattttctcaaattattatcc 52369780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 20691372 - 20691319
Alignment:
Q  353 cgacacctatgattacactaaaatatatcattttcttaaattattatccgtttc 406  Q
    |||||| |||||||||||| || ||| ||||||||| ||||||||||| |||||    
T  20691372 cgacacatatgattacactgaattatgtcattttctcaaattattatcagtttc 20691319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 25074848 - 25074795
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 400  Q
    ||||||| || |||||||||||||| || ||| ||||||||| |||||||||||    
T  25074848 ccgacacaacgcctatgattacactcaattatgtcattttctcaaattattatc 25074795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 25211648 - 25211607
Alignment:
Q  288 tatgaagcacaaacacttcttggattaggggtgtcctggtgt 329  Q
    ||||||||||||||||||||  ||||||| ||||||||||||    
T  25211648 tatgaagcacaaacacttctcagattaggcgtgtcctggtgt 25211607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 27903691 - 27903638
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 400  Q
    ||||||| |||| |||||||||| |||| |||||| |||||| |||||||||||    
T  27903691 ccgacacaacacttatgattacattaaattatatcgttttctcaaattattatc 27903638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 412
Target Start/End: Complemental strand, 12100331 - 12100264
Alignment:
Q  344 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 412  Q
    |||| |||||||||||||| |||||||| || ||||||| ||| | |||||||||| || |||||||||    
T  12100331 tgtcagacacgacacctattattacactgaattatatca-tttgtcaaattattatgcgattcggtgtc 12100264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 403
Target Start/End: Complemental strand, 2011 - 1952
Alignment:
Q  344 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 403  Q
    ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  2011 tgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgt 1952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 23354652 - 23354705
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 400  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  23354652 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatc 23354705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 347 - 412
Target Start/End: Complemental strand, 25544540 - 25544475
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 412  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||||||||| ||| ||||||||    
T  25544540 ccgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtcggtgtc 25544475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 411
Target Start/End: Complemental strand, 38919262 - 38919201
Alignment:
Q  350 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgt 411  Q
    ||||||||||||||||||||||||| |||| |||||||| ||||||||||| || |||||||    
T  38919262 acacgacacctatgattacactaaactataacattttctcaaattattatctgtatcggtgt 38919201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 401
Target Start/End: Complemental strand, 12748746 - 12748689
Alignment:
Q  344 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatcc 401  Q
    |||||||||| ||||||||||||||||| || ||| ||||||||| ||||||||||||    
T  12748746 tgtccgacacaacacctatgattacactgaactatgtcattttctcaaattattatcc 12748689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 400
Target Start/End: Original strand, 23354995 - 23355048
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 400  Q
    |||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  23354995 ccgacatgacacctatgattgcactaaattatatcattttctcaaattattatc 23355048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 24011095 - 24011042
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 400  Q
    ||||| |||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  24011095 ccgacgcgacacctatgattacactaaattatgtcattttctcaaattattatc 24011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 30563540 - 30563474
Alignment:
Q  287 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac 353  Q
    |||||||||||||  ||| |||||||||||| ||||||||||| |||||||| | | ||||||||||    
T  30563540 ctatgaagcacaagtactccttggattagggttgtcctggtgtcggatacgcctgggtgtccgacac 30563474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 37986835 - 37986785
Alignment:
Q  350 acacgacacctatgattacactaaaatatatcattttcttaaattattatc 400  Q
    |||||| ||||||||||||||| |||||||||||||| | |||||||||||    
T  37986835 acacgatacctatgattacactcaaatatatcattttttcaaattattatc 37986785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 400
Target Start/End: Complemental strand, 18571068 - 18570978
Alignment:
Q  310 gattaggggtgtcctggtgttggatacgcatcgatgtccgacac-gacacctatgattacactaaaatatatcattttcttaaattattatc 400  Q
    ||||||| |||||||||||| ||||| | |||| ||| |||||| ||||| |||||||||| | || ||| ||||||||| |||||||||||    
T  18571068 gattaggcgtgtcctggtgtcggatatgtatcg-tgttcgacactgacacatatgattacattgaattatgtcattttctcaaattattatc 18570978  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 399
Target Start/End: Complemental strand, 22085066 - 22085011
Alignment:
Q  345 gtccgacac-gacacctatgattacactaaaatatatcattttcttaaattattat 399  Q
    ||||||||| |||||  |||||||||||||| ||| ||||||||||||||||||||    
T  22085066 gtccgacaccgacacaaatgattacactaaattatgtcattttcttaaattattat 22085011  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 10535762 - 10535812
Alignment:
Q  350 acacgacacctatgattacactaaaatatatcattttcttaaattattatc 400  Q
    ||||||||| |||||||||||| || ||| ||||||||| |||||||||||    
T  10535762 acacgacacttatgattacactgaattatgtcattttctcaaattattatc 10535812  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 409
Target Start/End: Original strand, 11308004 - 11308065
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggt 409  Q
    ||||||||||||||||||||||||| || ||| ||||||| | |||||| ||||||| |||||    
T  11308004 ccgacacgacacctatgattacactgaattatgtcattttttcaaatta-tatccgtgtcggt 11308065  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 400
Target Start/End: Original strand, 34006930 - 34007044
Alignment:
Q  287 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac-gacacctatgattacactaaaatatatcattt 385  Q
    |||||||||||  ||||| |||| |||||| |||| | |||||  || ||| || | ||||| |||| |||||||||||||||||| || ||| ||| ||    
T  34006930 ctatgaagcacggacactccttgaattaggtgtgttccggtgtcagacacgaataggtgtcccacaccgacacctatgattacactgaattatgtcaatt 34007029  T
Q  386 tcttaaattattatc 400  Q
    ||| |||||||||||    
T  34007030 tctcaaattattatc 34007044  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 19574037 - 19573984
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 400  Q
    |||||||| ||||||| |||||||| || ||| | |||||||||||||||||||    
T  19574037 ccgacacgccacctataattacactgaattatgttattttcttaaattattatc 19573984  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 412
Target Start/End: Complemental strand, 6574047 - 6573983
Alignment:
Q  348 cgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 412  Q
    |||||| |||||||||||||||||||| ||||||||| ||| ||||||| |||||| ||||||||    
T  6574047 cgacacaacacctatgattacactaaattatatcattgtctcaaattatcatccgtgtcggtgtc 6573983  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 400
Target Start/End: Complemental strand, 19637889 - 19637774
Alignment:
Q  285 atctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac-gacacctatgattacactaaaatatatcat 383  Q
    |||||||| ||||||| ||| || |||||||||| |||| ||||| ||||| | |||| |||||||||| ||||| |||||||||| | ||  || ||||    
T  19637889 atctatgatgcacaaatactcctcggattaggggcgtcccggtgtcggatatgtatcg-tgtccgacaccgacacatatgattacattgaataatgtcat 19637791  T
Q  384 tttcttaaattattatc 400  Q
    |||||||||||||||||    
T  19637790 tttcttaaattattatc 19637774  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 42004947 - 42005003
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 403  Q
    ||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  42004947 ccgacacaacacctatgattacactaaattatgtcattttctcaaattattatccgt 42005003  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 48415728 - 48415787
Alignment:
Q  350 acacgacacctatgattacactaaaatatatcattttctt-aaattattatccgtttcgg 408  Q
    |||||||| |||||||||||||||| ||||||||||| || |||||||||||||| ||||    
T  48415728 acacgacatctatgattacactaaattatatcatttttttaaaattattatccgtgtcgg 48415787  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 403
Target Start/End: Original strand, 6936402 - 6936456
Alignment:
Q  349 gacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 403  Q
    ||||||||||||||||||||||| || ||| ||||||||| | ||||||||||||    
T  6936402 gacacgacacctatgattacacttaattatgtcattttctcagattattatccgt 6936456  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 413
Target Start/End: Original strand, 40747707 - 40747839
Alignment:
Q  287 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac------gacacctatgattacactaaaatatat 380  Q
    |||||||||||  || || || |||||||||||||||  |||| ||| | | |||| ||||||||||      ||||||||| |||||| | || ||| |    
T  40747707 ctatgaagcacggacgctcctcggattaggggtgtccctgtgtgggacatggatcggtgtccgacaccaacatgacacctataattacattgaattatgt 40747806  T
Q  381 cattttcttaaattattatccgtttcggtgtct 413  Q
    |||||||| |||||||||||||| |||||||||    
T  40747807 cattttctcaaattattatccgtgtcggtgtct 40747839  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 412
Target Start/End: Complemental strand, 23440051 - 23440004
Alignment:
Q  365 ttacactaaaatatatcattttcttaaattattatccgtttcggtgtc 412  Q
    |||||||||| ||||||||||||| |||||||||| ||| ||||||||    
T  23440051 ttacactaaattatatcattttctcaaattattatacgtgtcggtgtc 23440004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 398
Target Start/End: Original strand, 12040688 - 12040734
Alignment:
Q  353 cgacacctatgattacactaaaat-atatcattttcttaaattatta 398  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  12040688 cgacacctatgattatactgaaattatatcattttcttaaattatta 12040734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 400
Target Start/End: Original strand, 7988388 - 7988504
Alignment:
Q  284 aatctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacga-cacctatgattacactaaaatatatca 382  Q
    ||||||||||||||| | ||| |||||| |||   |||| |||||||| ||||| || | |||||||||| | ||| |||||||||| | || ||| |||    
T  7988388 aatctatgaagcacataaactccttggactagacatgtcatggtgttgaatacgtattg-tgtccgacaccaacacttatgattacattgaattatgtca 7988486  T
Q  383 ttttcttaaattattatc 400  Q
     |||||||||||||||||    
T  7988487 ctttcttaaattattatc 7988504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 21145526 - 21145469
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttctt-aaattattatccgt 403  Q
    |||||||||| |||||||||||||| || ||| ||||||| || ||||||||||||||    
T  21145526 ccgacacgacgcctatgattacactgaattatgtcatttttttcaaattattatccgt 21145469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 11634127 - 11634179
Alignment:
Q  350 acacgacacctatgattacactaaaatatatcattttcttaaattattatccg 402  Q
    |||||||||||||||||||| |||| ||| |  |||||| |||||||||||||    
T  11634127 acacgacacctatgattacattaaattatgttgttttctcaaattattatccg 11634179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 403
Target Start/End: Original strand, 22794018 - 22794134
Alignment:
Q  287 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcatttt 386  Q
    |||||||||||  ||||| || | |||||| |||||| || || ||| | || ||  |||| |||||||||||||| ||||||||  | ||| |||||||    
T  22794018 ctatgaagcacgtacactcctcgaattaggtgtgtcccggagtcggacatgcgtcagtgtcggacacgacacctataattacactgtattatgtcatttt 22794117  T
Q  387 cttaaattattatccgt 403  Q
     | ||||||||||||||    
T  22794118 ttcaaattattatccgt 22794134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 4461 - 4404
Alignment:
Q  351 cacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 408  Q
    ||||||| ||||||| ||||| || |||||||| |||||||||||||||| |||||||    
T  4461 cacgacatctatgatgacactgaattatatcatattcttaaattattatctgtttcgg 4404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 403
Target Start/End: Original strand, 8053 - 8109
Alignment:
Q  347 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 403  Q
    ||||||||| ||||||| ||||||| || ||| ||||||||| ||||||||||||||    
T  8053 ccgacacgatacctatgtttacactgaattatgtcattttctcaaattattatccgt 8109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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