View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_19 (Length: 464)
Name: NF8511_low_19
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 205 - 447
Target Start/End: Complemental strand, 36113287 - 36113044
Alignment:
| Q |
205 |
tcctccaaagttcatagtgatcacgaaacctagcaaaacaacactagaacaccaaaaacaagtgttcacaactctctcactattgtcatcacgatatgga |
304 |
Q |
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| T |
36113287 |
tcctccaaagttcatagtgatcacgaaacctagcaaaacaacactaaaacaccaaaaacaagtgttcacaactctctcactattgtcatcacgatatgga |
36113188 |
T |
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| Q |
305 |
tcctcttcggaaaagtttgcaaatcctagcaaattaatctcattgtgttgaagaaccatcaaacttggtaggactattggatgttgattgatgatgtata |
404 |
Q |
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| T |
36113187 |
tcctcttcgaaaaagtttgcaaatcctagcaaattaatctcattgtgttgaagaaccatcaaacttggtaggactattggatgttgattgatgatgtata |
36113088 |
T |
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| Q |
405 |
ggtgctgat-ttttgtgttagttctgctgtctacggtcagttat |
447 |
Q |
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| T |
36113087 |
ggtgctgattttttgtgttagttctgctgccttcggtcagttat |
36113044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 36113489 - 36113354
Alignment:
| Q |
5 |
gtttggagttagtttgctaatcattgcagactagttaattgttgcagctaatataatcaaaattattaacaaagtttataaat--tgtgtggtctcgtta |
102 |
Q |
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| T |
36113489 |
gtttggagttagtttgctaatcattgcagactagttaattgttgcagctaatataatcaaaattattaacaaagtttttaaattatgtctggtctcgtta |
36113390 |
T |
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| Q |
103 |
aaaaccaaatcaactcaaattgcgttggtttgcttc |
138 |
Q |
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| T |
36113389 |
aaaaccaaatcaactcaaattgcgttggtttgcttc |
36113354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 8691201 - 8691244
Alignment:
| Q |
34 |
actagttaattgttgcagctaatataatcaaaattattaacaaa |
77 |
Q |
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| T |
8691201 |
actagtaaattgttgcagccaatataatcaaaattattgacaaa |
8691244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 33639780 - 33639830
Alignment:
| Q |
18 |
ttgctaatcattgcagactagttaattgttgcagctaatataatcaaaatt |
68 |
Q |
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| T |
33639780 |
ttgctaatcattgaaaactagttaattgttgctgctaatataatcaaaatt |
33639830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 98
Target Start/End: Original strand, 48624730 - 48624792
Alignment:
| Q |
36 |
tagttaattgttgcagctaatataatcaaaattattaacaaagtttataaattgtgtggtctc |
98 |
Q |
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| T |
48624730 |
tagttaattgttgccgctaatataatcaaaattgttgacatattttttaaattgtgtgttctc |
48624792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 13044246 - 13044197
Alignment:
| Q |
22 |
taatcattgcagactagttaattgttgcagctaatataatcaaaattatt |
71 |
Q |
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| T |
13044246 |
taatcgttgcaaactagttaattgttgtaactaatataatcaaaattatt |
13044197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 13114244 - 13114195
Alignment:
| Q |
22 |
taatcattgcagactagttaattgttgcagctaatataatcaaaattatt |
71 |
Q |
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| T |
13114244 |
taatcgttgcaaactagttaattgttgtaactaatataatcaaaattatt |
13114195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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