View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_2 (Length: 658)

Name: NF8511_low_2
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_2
NF8511_low_2
[»] chr5 (1 HSPs)
chr5 (16-648)||(32842266-32842900)


Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 16 - 648
Target Start/End: Complemental strand, 32842900 - 32842266
Alignment:
Q  16 cacatatactattaatagttattccattctggaaccaagataatataaaaataaagctattttccctagttttactttgtcaatatttatttatgatttt 115  Q
    |||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32842900 cacatatactattactagttattccattccggaaccaagatagtataaaaataaagctattttccctagttttactttgtcaatatttatttatgatttt 32842801  T
Q  116 agaattggacatatgtatggttgcaccatcacaagtgattgatgggtgatgatgcaaatactacatagtaagaatttaaggctcgtccaataaaaatttc 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32842800 agaattggacatatgtatggttgcaccatcacaagggattgatgggtgatgatgcaaatactacatagtaagaatttaaggctcgtccaataaaaatttc 32842701  T
Q  216 atgagtagatcaatgtatccttaacag--ctactaattaacatactaatatcactattcaagaaatactaaaatgacaattaacgtcatgacatttgtcg 313  Q
    |||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32842700 atgagtagatcaatatatccttaacagctctactaattaacatactaatatcactattcaagaaatactaaaatgacaattaacatcatgacatttgtcg 32842601  T
Q  314 ttaataaaaacatatgtttatctcttctaaatgttat----------gttaaagacaaaatctagctagtaagttgggtttttggtacattgaaaggtaa 403  Q
    |||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32842600 ttaataaaaacatatgtttatctcttctaaatgttatgtatagcaaagttaaagacaaaatctagctagtaagttgggtttttggtacattgaaaggtaa 32842501  T
Q  404 atgttattaacacttcccattcatcattgaaagcaactcttctcacattcannnnnnnctctttaaacaccgtaaaaataccaaaataacaccaacaaca 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||| |||||||||    
T  32842500 atgttattaacacttcccattcatcattgaaagcaactcttctcacattca-ttttttctctttaaacaccataaaaataccaaaataactccaacaaca 32842402  T
Q  504 gttaattgctgcttgctcccaacaacatttgccaagcggtgtttagaagcaaaaatagaagtgagaaaagcaagatccttcatcatttgccccatctttt 603  Q
     |||| || ||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||||||||||||||||             
T  32842401 attaactgttgcttgctcccaacaacatttgccacgcagtgtttagaagcaaaaatagaaatgagaaaagcaaaatccttcatcatttgcc--------- 32842311  T
Q  604 ttagtttcctattcaaaacaaccaaagtgtatcttttgagtatta 648  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  32842310 ttagtttcctattcaaaacaaccaaaatgtatcttttgagtatta 32842266  T

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