View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_21 (Length: 449)

Name: NF8511_low_21
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_21
NF8511_low_21
[»] chr8 (10 HSPs)
chr8 (19-284)||(34743055-34743320)
chr8 (305-441)||(34742346-34742482)
chr8 (46-152)||(28009176-28009282)
chr8 (46-152)||(28066479-28066585)
chr8 (375-437)||(34751817-34751879)
chr8 (111-157)||(12503299-12503345)
chr8 (97-155)||(19923471-19923529)
chr8 (98-155)||(34743764-34743821)
chr8 (111-142)||(10206078-10206109)
chr8 (98-155)||(24628219-24628276)
[»] scaffold0260 (1 HSPs)
scaffold0260 (62-157)||(20500-20595)
[»] chr4 (4 HSPs)
chr4 (74-157)||(28999503-28999586)
chr4 (79-139)||(16585613-16585673)
chr4 (24-59)||(40312321-40312356)
chr4 (24-59)||(40322397-40322432)
[»] chr1 (6 HSPs)
chr1 (45-149)||(36816938-36817044)
chr1 (75-149)||(32306469-32306543)
chr1 (384-437)||(11980881-11980934)
chr1 (111-155)||(11788177-11788222)
chr1 (44-149)||(29861426-29861531)
chr1 (111-155)||(15474674-15474718)
[»] chr5 (2 HSPs)
chr5 (90-155)||(15238954-15239019)
chr5 (111-157)||(12066836-12066883)
[»] chr3 (2 HSPs)
chr3 (111-156)||(1885126-1885171)
chr3 (117-149)||(30259884-30259916)
[»] scaffold1107 (1 HSPs)
scaffold1107 (81-149)||(1460-1528)
[»] chr6 (1 HSPs)
chr6 (98-156)||(14710078-14710136)
[»] scaffold0067 (1 HSPs)
scaffold0067 (81-149)||(15522-15590)
[»] chr7 (3 HSPs)
chr7 (101-153)||(31268054-31268106)
chr7 (117-154)||(2169285-2169322)
chr7 (79-155)||(35720297-35720373)
[»] chr2 (5 HSPs)
chr2 (111-155)||(4783536-4783580)
chr2 (61-155)||(37828446-37828540)
chr2 (98-149)||(690333-690384)
chr2 (124-156)||(29667795-29667827)
chr2 (115-155)||(41358231-41358271)
[»] scaffold0018 (1 HSPs)
scaffold0018 (111-157)||(123331-123378)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 34743320 - 34743055
Alignment:
Q  19 tcaccagcgtgacttaagtcatgctgcgtgagttaacttacattgggttatacatctgcatgagttaactaacgcgggagtattttggacagttcagttg 118  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34743320 tcaccggcgtgacttaagtcatgctgcgtgagttaactcacgttgggttatacatctgcatgagttaactcacgcgggagtattttggacagttcagttg 34743221  T
Q  119 ggagggagcgttttttgttgggagaagagcatttttctttgttgtgcggtgccggtagcaattgtgggaatatgagcgtatcacaagggtgatgtgtttg 218  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34743220 ggagggagcattttttgttgggagaagagcatttttctttgttgtgcggtgccggtagcaattgtgggaatatgagcgtatcacaagggtgatgtgtttg 34743121  T
Q  219 aggaatgatccttgtaacgctctgcaagggaaatgtattaagaagcatatagcaaaaaattaagca 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34743120 aggaatgatccttgtaacgctctgcaagggaaatgtattaagaagcatatagcaaaaaattaagca 34743055  T

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Target: chr8; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 305 - 441
Target Start/End: Complemental strand, 34742482 - 34742346
Alignment:
Q  305 caaggcattgcagtcagacttggttgaaatgcagtaccatatagcttcttgttacacagttttataccatatggcacaggaaccttcaaccattccctag 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34742482 caaggcattgcagtcagacttggttgaaatgcagtaccatatagcttcttgttacacagttttattccatatggcacaggaaccttcaaccattccctag 34742383  T
Q  405 ttgctatgttgtaagtaaacataagatgcatatcatt 441  Q
    |||||||||||||||||||||||||||||||||||||    
T  34742382 ttgctatgttgtaagtaaacataagatgcatatcatt 34742346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 28009176 - 28009282
Alignment:
Q  46 gtgagttaacttacattgggttatacatctgcatgagttaactaacgcgggagtattttggacagttcagttgggagggagcgttttttgttgggagaag 145  Q
    ||||||||||| ||  ||||||||||| |||| |||||||||| |||| || ||||||| || ||||  |||||||| ||||  |||||| |||||||||    
T  28009176 gtgagttaactcacgctgggttatacacctgcgtgagttaactcacgcaggggtatttttgaaagtttggttgggagcgagcaatttttgatgggagaag 28009275  T
Q  146 agcattt 152  Q
    |||||||    
T  28009276 agcattt 28009282  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 28066479 - 28066585
Alignment:
Q  46 gtgagttaacttacattgggttatacatctgcatgagttaactaacgcgggagtattttggacagttcagttgggagggagcgttttttgttgggagaag 145  Q
    ||||||||||| ||  ||||||||||| |||| |||||||||| |||| || ||||||| || ||||  |||||||| ||||  |||||| |||||||||    
T  28066479 gtgagttaactcacgctgggttatacacctgcgtgagttaactcacgcaggggtatttttgaaagtttggttgggagcgagcaatttttgatgggagaag 28066578  T
Q  146 agcattt 152  Q
    |||||||    
T  28066579 agcattt 28066585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 437
Target Start/End: Complemental strand, 34751879 - 34751817
Alignment:
Q  375 atggcacaggaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcatat 437  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||||||||| ||| |||||    
T  34751879 atggcacaaaaaccttcagccattccctagttgctatgttgtaagtaaacatatgatacatat 34751817  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 12503345 - 12503299
Alignment:
Q  111 ttcagttgggagggagcgttttttgttgggagaagagcatttttctt 157  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||    
T  12503345 ttcagttgggagggagtgttttttgttgggagaagagcaattttctt 12503299  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 19923471 - 19923529
Alignment:
Q  97 agtattttggacagttcagttgggagggagcgttttttgttgggagaagagcatttttc 155  Q
    ||||||||||| ||||  |||||||| |||| ||||||||||||||||||||| |||||    
T  19923471 agtattttggaaagtttggttgggagtgagctttttttgttgggagaagagcaattttc 19923529  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 34743764 - 34743821
Alignment:
Q  98 gtattttggacagttcagttgggagggagcgttttttgttgggagaagagcatttttc 155  Q
    ||||||||| |||||||||||  ||||||| ||||||| ||||||||||||| |||||    
T  34743764 gtattttgggcagttcagttgaaagggagcattttttgctgggagaagagcaattttc 34743821  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 142
Target Start/End: Original strand, 10206078 - 10206109
Alignment:
Q  111 ttcagttgggagggagcgttttttgttgggag 142  Q
    ||||||||||||||||||||||||||||||||    
T  10206078 ttcagttgggagggagcgttttttgttgggag 10206109  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 24628276 - 24628219
Alignment:
Q  98 gtattttggacagttcagttgggagggagcgttttttgttgggagaagagcatttttc 155  Q
    ||||||||| || ||  ||| |||| ||||||||||||||||||||| ||||||||||    
T  24628276 gtattttgggcaatttggttaggagtgagcgttttttgttgggagaaaagcatttttc 24628219  T

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Target: scaffold0260 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 20500 - 20595
Alignment:
Q  62 tgggttatacatctgcatgagttaactaacgcgggagtattttggacagttcagttgggagggagcgttttttgttgggagaagagcatttttctt 157  Q
    ||||||||||| |||| |||||||||| || | ||||||||||||  ||||||||||| || |||||||||||||||||| ||||||| |||||||    
T  20500 tgggttatacacctgcgtgagttaactcacacaggagtattttgggaagttcagttggtagtgagcgttttttgttgggaaaagagcaattttctt 20595  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 28999503 - 28999586
Alignment:
Q  74 ctgcatgagttaactaacgcgggagtattttggacagttcagttgggagggagcgttttttgttgggagaagagcatttttctt 157  Q
    ||||||||||||||| ||| || |||||||||   ||||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  28999503 ctgcatgagttaactcacgtggaagtattttgagaagttcagttgggagggagcatttttagttgggagaagagcaattttctt 28999586  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 16585673 - 16585613
Alignment:
Q  79 tgagttaactaacgcgggagtattttggacagttcagttgggagggagcgttttttgttgg 139  Q
    |||||||||| |||  |||||||||||||||||||||||| |||||| |||||||| ||||    
T  16585673 tgagttaacttacggaggagtattttggacagttcagttgagagggaacgttttttattgg 16585613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 40312356 - 40312321
Alignment:
Q  24 agcgtgacttaagtcatgctgcgtgagttaacttac 59  Q
    |||||||||||||||| |||||||||||||||||||    
T  40312356 agcgtgacttaagtcacgctgcgtgagttaacttac 40312321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 40322432 - 40322397
Alignment:
Q  24 agcgtgacttaagtcatgctgcgtgagttaacttac 59  Q
    |||||||||||||||| |||||||||||||||||||    
T  40322432 agcgtgacttaagtcacgctgcgtgagttaacttac 40322397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 36817044 - 36816938
Alignment:
Q  45 cgtgagttaacttacattgggttatacatctgcatgagttaactaacgcgggagtattttggacagttcagttgggagggagc--gttttttgttgggag 142  Q
    ||||| |||||| ||  ||||||||| |  ||| |||||||||| |||||||||||||||||  |||||||||||||||||||   |||||| |||||||    
T  36817044 cgtgacttaactcacgctgggttatatacatgcgtgagttaactcacgcgggagtattttgggaagttcagttgggagggagcattttttttattgggag 36816945  T
Q  143 aagagca 149  Q
    |||||||    
T  36816944 aagagca 36816938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 32306469 - 32306543
Alignment:
Q  75 tgcatgagttaactaacgcgggagtattttggacagttcagttgggagggagcgttttttgttgggagaagagca 149  Q
    |||||||||||||| |||| ||  ||||||||| |||||||||||| | ||| ||||| ||||||||||||||||    
T  32306469 tgcatgagttaactcacgcagggatattttggaaagttcagttgggcgcgagtgttttgtgttgggagaagagca 32306543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 11980934 - 11980881
Alignment:
Q  384 gaaccttcaaccattccctagttgctatgttgtaagtaaacataagatgcatat 437  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||| ||| |||||    
T  11980934 gaaccgtcaaccattccctagttgctatgttgtaaataatcatacgatacatat 11980881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 11788222 - 11788177
Alignment:
Q  111 ttcagttgggagggagcgttttttgttgggag-aagagcatttttc 155  Q
    ||||||||||||| || ||||||||||||||| |||||||||||||    
T  11788222 ttcagttgggaggaagtgttttttgttgggagaaagagcatttttc 11788177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 29861531 - 29861426
Alignment:
Q  44 gcgtgagttaacttacattgggttatacatctgcatgagttaactaacgcgggagtattttggacagttcagttgggagggagcgttttttgttgggaga 143  Q
    |||||| |||| | ||| ||||||||||| |||  |||||||||| ||||||  |||||||||  ||||    || ||| |||||||||||||||||| |    
T  29861531 gcgtgacttaagtcacactgggttatacacctgtgtgagttaactcacgcggaggtattttggctagtttgtatgagagtgagcgttttttgttgggata 29861432  T
Q  144 agagca 149  Q
    ||||||    
T  29861431 agagca 29861426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 15474674 - 15474718
Alignment:
Q  111 ttcagttgggagggagcgttttttgttgggagaagagcatttttc 155  Q
    |||| |||||||| || ||||||||||||||||||| ||||||||    
T  15474674 ttcaattgggaggaagtgttttttgttgggagaagaccatttttc 15474718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 15238954 - 15239019
Alignment:
Q  90 acgcgggagtattttggacagttcagttgggagggagcgttttttgttgggagaagagcatttttc 155  Q
    ||||||||||| ||| | || |||||||||||| |||||||||||||||||||||||||| |||||    
T  15238954 acgcgggagtactttcgtcaattcagttgggagtgagcgttttttgttgggagaagagcaattttc 15239019  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 12066883 - 12066836
Alignment:
Q  111 ttcagttgggagggagcgtttttt-gttgggagaagagcatttttctt 157  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  12066883 ttcagttgggagggagtgtttttttgttgggagaagagcatttttctt 12066836  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 1885171 - 1885126
Alignment:
Q  111 ttcagttgggagggagcgttttttgttgggagaagagcatttttct 156  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||    
T  1885171 ttcagttgggagggagtgttttttgatgggagaagagcatttttct 1885126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 149
Target Start/End: Original strand, 30259884 - 30259916
Alignment:
Q  117 tgggagggagcgttttttgttgggagaagagca 149  Q
    |||||| ||||||||||||||||||||||||||    
T  30259884 tgggagtgagcgttttttgttgggagaagagca 30259916  T

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Target: scaffold1107 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 1528 - 1460
Alignment:
Q  81 agttaactaacgcgggagtattttggacagttcagttgggagggagcgttttttgttgggagaagagca 149  Q
    |||||||| |||| || |||||||||| |||||||||||  | ||||||||| ||||||||||||||||    
T  1528 agttaactcacgcaggggtattttggaaagttcagttggacgcgagcgttttctgttgggagaagagca 1460  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 14710136 - 14710078
Alignment:
Q  98 gtattttggacagttcagttgggagggagcgttttttgttgggagaagagcatttttct 156  Q
    |||||||||| ||||  ||||| || |||| ||||||||||||||||||||||||||||    
T  14710136 gtattttggaaagttgggttggaagtgagcattttttgttgggagaagagcatttttct 14710078  T

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Target: scaffold0067 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 15590 - 15522
Alignment:
Q  81 agttaactaacgcgggagtattttggacagttcagttgggagggagcgttttttgttgggagaagagca 149  Q
    |||||||| || | || |||||||||| |||||||||||  | ||||||||| ||||||||||||||||    
T  15590 agttaactcacacaggggtattttggaaagttcagttggacgcgagcgttttctgttgggagaagagca 15522  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 31268054 - 31268106
Alignment:
Q  101 ttttggacagttcagttgggagggagcgttttttgttgggagaagagcatttt 153  Q
    |||||| || |||| |||||||||||| |||||||||||||||| ||||||||    
T  31268054 ttttggtcatttcaattgggagggagccttttttgttgggagaatagcatttt 31268106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 2169285 - 2169322
Alignment:
Q  117 tgggagggagcgttttttgttgggagaagagcattttt 154  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  2169285 tgggagtgagcgttttttgttgggagaagagcaatttt 2169322  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 35720297 - 35720373
Alignment:
Q  79 tgagttaactaacgcgggagtattttggacagttcagttgggagggagcgttttttgttgggagaagagcatttttc 155  Q
    |||||||||| ||||  |||||||||| | ||||  |||||||| || | |||||| ||||||||||||| ||||||    
T  35720297 tgagttaactcacgcatgagtattttgaaaagttaggttgggagtgaacatttttttttgggagaagagcttttttc 35720373  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 4783536 - 4783580
Alignment:
Q  111 ttcagttgggagggagcgttttttgttgggagaagagcatttttc 155  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||    
T  4783536 ttcagttgggaggaagtgttttttgttgggagaaaagcatttttc 4783580  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 37828540 - 37828446
Alignment:
Q  61 ttgggttatacatctgcatgagttaactaacgcgggagtattttggacagttcagttgggagggagcgttttttgttgggagaagagcatttttc 155  Q
    |||| ||||| | |||| |||||||||| ||||| | ||||||||| |||||    || ||| || ||||||||||||||||||||||| |||||    
T  37828540 ttggattatatacctgcgtgagttaactcacgcgagggtattttggtcagtttgtatgtgagtgatcgttttttgttgggagaagagcaattttc 37828446  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 690333 - 690384
Alignment:
Q  98 gtattttggacagttcagttgggagggagcgtttt-ttgttgggagaagagca 149  Q
    ||||||||| |||||| |||||||| ||||||||| |||||||||||||||||    
T  690333 gtattttgg-cagttctgttgggagtgagcgtttttttgttgggagaagagca 690384  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 29667795 - 29667827
Alignment:
Q  124 gagcgttttttgttgggagaagagcatttttct 156  Q
    |||||||||||||||||||||||||| ||||||    
T  29667795 gagcgttttttgttgggagaagagcaattttct 29667827  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 41358231 - 41358271
Alignment:
Q  115 gttgggagggagcgttttttgttgggagaagagcatttttc 155  Q
    |||||||| |||| ||||||||| |||||||||||||||||    
T  41358231 gttgggagtgagcattttttgttaggagaagagcatttttc 41358271  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 123331 - 123378
Alignment:
Q  111 ttcagttgggagggagcgttttttgt-tgggagaagagcatttttctt 157  Q
    ||||||||||||||||| |||||| | |||||||||||||||||||||    
T  123331 ttcagttgggagggagcattttttttatgggagaagagcatttttctt 123378  T

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