View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8511_low_22 (Length: 449)
Name: NF8511_low_22
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8511_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 10 - 433
Target Start/End: Original strand, 39791741 - 39792179
Alignment:
| Q |
10 |
tggtggtccccaatcatacaattttaaacgaaatttacttccagtttgaaaagtatgcatgtaagtgagagttgtgagttaattaa------------ct |
97 |
Q |
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| T |
39791741 |
tggtggtccccaatcatacaattttaaatgaaatttacttccagtttgaaaagtatgcatgtaagtgagagttgtgagttaattaatatgcgattatact |
39791840 |
T |
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| Q |
98 |
tggtatcgagacccttaattaacgtggtggtgctacctttgttct---aatttggttccaacttataatcccattcacttcatatttacttgagaagagg |
194 |
Q |
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| T |
39791841 |
tgataacgagacccttaattaatgtggtggtgctacctttgttcttctaatttggttccaacttgtaatcccattcacttcatatttacttgagaagagg |
39791940 |
T |
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| Q |
195 |
catttcccttaacatatagttcaaacattttattccaaatgggagatgattttaaagtttttgcttgaaaccctcaatgaaataagttaaaataacttgg |
294 |
Q |
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| T |
39791941 |
catttcccttaacatatagttcaaacattttattctaaatgggagatgattttaaagtttttgcttgaaaccctcaatgaaataagttaaaataacttgg |
39792040 |
T |
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| Q |
295 |
acctcaagaaatttgtataatataatcacaatttacttaaaaaggatctttacataaccaagaaaaattctaaaataacaacttgaagagaaagatcata |
394 |
Q |
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| T |
39792041 |
acctcaagaaatttgtataatataatcacaatttacttaaaaaggatctttacataaccaagaaaaattctaaaataacaacttgaagagaaagatcata |
39792140 |
T |
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| Q |
395 |
attctagactgtaattgtgactcggcttatgatcatact |
433 |
Q |
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| T |
39792141 |
attctagactgtaattgtgactcggcttatgatcatact |
39792179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 39780615 - 39780667
Alignment:
| Q |
15 |
gtccccaatcatacaattttaaacgaaatttacttccagtttgaaaagtatgc |
67 |
Q |
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| T |
39780615 |
gtccccaatcatacaattttaaacgaaatttacttccagtttgtaaagtatgc |
39780667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 17480650 - 17480557
Alignment:
| Q |
270 |
aatgaaataagttaaaataacttggacctcaagaaatttgtataatataatcacaatttacttaaaaaggatctttacataaccaagaaaaatt |
363 |
Q |
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| T |
17480650 |
aatgaaataatttagaataacttgcattccatgaaacttgtataaaataattacaatttatttaaaagatatctttacataaccaataaaaatt |
17480557 |
T |
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