View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8511_low_23 (Length: 444)

Name: NF8511_low_23
Description: NF8511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8511_low_23
NF8511_low_23
[»] chr6 (8 HSPs)
chr6 (18-389)||(33187010-33187382)
chr6 (88-179)||(10067684-10067775)
chr6 (70-119)||(20565795-20565844)
chr6 (31-141)||(9307229-9307335)
chr6 (88-179)||(33551048-33551139)
chr6 (88-122)||(19264742-19264776)
chr6 (97-141)||(28748036-28748080)
chr6 (70-158)||(33806684-33806772)
[»] chr4 (10 HSPs)
chr4 (97-179)||(51234426-51234508)
chr4 (70-179)||(8170924-8171033)
chr4 (73-220)||(52700913-52701060)
chr4 (75-141)||(38080937-38081003)
chr4 (77-141)||(4215168-4215232)
chr4 (77-119)||(46804796-46804838)
chr4 (88-185)||(8755921-8756018)
chr4 (70-179)||(17381513-17381622)
chr4 (70-122)||(27298561-27298613)
chr4 (89-181)||(37197545-37197637)
[»] chr2 (11 HSPs)
chr2 (70-175)||(19206469-19206574)
chr2 (88-179)||(12676433-12676524)
chr2 (70-141)||(40124298-40124369)
chr2 (70-181)||(18903130-18903241)
chr2 (70-181)||(23359377-23359489)
chr2 (90-140)||(14441108-14441158)
chr2 (88-170)||(28834674-28834756)
chr2 (78-119)||(1517582-1517623)
chr2 (70-119)||(6788509-6788558)
chr2 (82-134)||(39095105-39095157)
chr2 (74-122)||(42657786-42657834)
[»] chr1 (12 HSPs)
chr1 (40-223)||(30519045-30519224)
chr1 (87-185)||(2473154-2473251)
chr1 (38-179)||(30050557-30050694)
chr1 (88-122)||(2261953-2261987)
chr1 (75-159)||(2262135-2262219)
chr1 (97-181)||(4214455-4214539)
chr1 (70-138)||(38445173-38445241)
chr1 (152-305)||(35607217-35607369)
chr1 (70-132)||(39162617-39162678)
chr1 (88-206)||(45679674-45679792)
chr1 (70-119)||(16192267-16192316)
chr1 (70-162)||(18894627-18894719)
[»] scaffold0003 (2 HSPs)
scaffold0003 (87-181)||(89060-89154)
scaffold0003 (232-324)||(109233-109324)
[»] chr3 (10 HSPs)
chr3 (86-180)||(2096272-2096366)
chr3 (88-178)||(48048014-48048104)
chr3 (70-141)||(31198107-31198178)
chr3 (70-141)||(47944550-47944621)
chr3 (77-179)||(22235228-22235330)
chr3 (70-122)||(38989763-38989815)
chr3 (70-185)||(14984440-14984555)
chr3 (70-119)||(17573211-17573260)
chr3 (70-119)||(40619213-40619262)
chr3 (88-141)||(47944335-47944388)
[»] chr7 (13 HSPs)
chr7 (70-179)||(34703663-34703771)
chr7 (74-141)||(23441491-23441558)
chr7 (86-168)||(10228750-10228832)
chr7 (130-216)||(24352396-24352481)
chr7 (30-141)||(38838647-38838754)
chr7 (74-158)||(23474545-23474629)
chr7 (74-141)||(23457816-23457883)
chr7 (74-141)||(23532883-23532950)
chr7 (77-119)||(5358248-5358290)
chr7 (96-141)||(23533114-23533159)
chr7 (123-184)||(30990994-30991055)
chr7 (96-132)||(23474783-23474819)
chr7 (77-141)||(32996503-32996567)
[»] chr5 (9 HSPs)
chr5 (69-162)||(23159062-23159155)
chr5 (88-179)||(3599847-3599938)
chr5 (69-179)||(917121-917231)
chr5 (73-119)||(9607139-9607185)
chr5 (71-141)||(22579505-22579575)
chr5 (77-179)||(26675045-26675147)
chr5 (77-179)||(26946653-26946755)
chr5 (32-141)||(7756407-7756512)
chr5 (88-181)||(9607361-9607454)
[»] chr8 (11 HSPs)
chr8 (72-179)||(21600438-21600545)
chr8 (70-179)||(2986914-2987022)
chr8 (78-158)||(21145619-21145699)
chr8 (129-181)||(30841094-30841146)
chr8 (86-141)||(28929526-28929581)
chr8 (88-223)||(41616693-41616828)
chr8 (97-179)||(44362617-44362699)
chr8 (79-140)||(7681012-7681073)
chr8 (77-170)||(10708583-10708676)
chr8 (70-119)||(21601941-21601990)
chr8 (70-122)||(33508452-33508502)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 33187382 - 33187010
Alignment:
Q  18 aaaaatttaagtggtaatgattattttggtctttgaatgtgtaacaatcggttagtcataatagtccataaatgtatcgaaattttaaaatagtctctga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  33187382 aaaaatttaagtggtaatgattattttggtctttgaatgtgtaacgatcggttagtcataatagttcataaatgtatcgaaatttcaaaatagtctctga 33187283  T
Q  118 ttatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatcaatccgtataagtacttaattattgtt-atatcaatc 216  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33187282 ttatgaatttcgttaatcaaaatattatctcatgttaaatttttttgttaatactgtcatatcaatccgtataagtacttaattattgttaatatcaatc 33187183  T
Q  217 tctataagnnnnnnngttattgtcaacattgaagaactattagaacgtcaatgactattttgactatcgaaatgcacatccaaaaactagattaaaattt 316  Q
    ||||||||       ||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||  |||||||||    
T  33187182 tctataagaaaaaaagttattgtcaacattgaagaactattttaacgtcaatgactattttgactatcgaactgcacatccaaaaactattttaaaattt 33187083  T
Q  317 cgatacattcaaaaacgtttagggggccagaatggttacaaagctagattgtaaatagtaataatgaagaaga 389  Q
    ||||||||||| |||| |||| ||| ||| ||||  ||| |  ||| ||||||||| |||||||| |||||||    
T  33187082 cgatacattcagaaacatttacgggaccaaaatgactaccatcctaaattgtaaatggtaataatcaagaaga 33187010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 179
Target Start/End: Complemental strand, 10067775 - 10067684
Alignment:
Q  88 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatat 179  Q
    |||||||||||||||||||||||||||||||| || |||| ||||||||||||| | ||| |  |||||||  |||||||||| ||||||||    
T  10067775 aatgtatcgaaattttaaaatagtctctgattgtgtattttgttaatcaaaatagtctctgacattaaaatactttgttaatattgtcatat 10067684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 20565844 - 20565795
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgatt 119  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  20565844 tagtcataatagtccatcaatgtatcgaatttttaaaatagtctctgatt 20565795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 9307229 - 9307335
Alignment:
Q  31 gtaatgattattttggtctttgaatgtgtaacaatcggttagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgt 130  Q
    |||||| |||||||| ||| ||||||||||| ||     |||| |||||||||  |||||||||| ||||||||||||||| | | |||||| | |||||    
T  9307229 gtaatggttattttgatctctgaatgtgtaataaa----tagtgataatagtctctaaatgtatcaaaattttaaaatagttttttattatgcacttcgt 9307324  T
Q  131 taatcaaaata 141  Q
    |||||||||||    
T  9307325 taatcaaaata 9307335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 179
Target Start/End: Complemental strand, 33551139 - 33551048
Alignment:
Q  88 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatat 179  Q
    |||||||| ||||||||||||| | ||||||| || ||||||||| |||||||| | ||| ||||| ||||||||  |||||| | ||||||    
T  33551139 aatgtatcaaaattttaaaatattatctgattgtgcatttcgttagtcaaaataatttctgatgttgaaatgtttctttaatattatcatat 33551048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Complemental strand, 19264776 - 19264742
Alignment:
Q  88 aatgtatcgaaattttaaaatagtctctgattatg 122  Q
    |||||||||||||||||||||||||||||||||||    
T  19264776 aatgtatcgaaattttaaaatagtctctgattatg 19264742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 28748080 - 28748036
Alignment:
Q  97 aaattttaaaatagtctctgattatgaatttcgttaatcaaaata 141  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||||    
T  28748080 aaattttaaaatagtatctgattatgaattttgttagtcaaaata 28748036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 33806684 - 33806772
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaat 158  Q
    |||||| |||| ||| | |||||||||||||| ||||||||||  |||||||| | || |||| |||||||| | ||| | ||||||||    
T  33806684 tagtcacaataatcctttaatgtatcgaaattctaaaatagtcattgattatgtactttgttagtcaaaatagtctctaacgttaaaat 33806772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 51234508 - 51234426
Alignment:
Q  97 aaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatat 179  Q
    ||||||||||||||||||| | |||| ||||||||| |||||||| | ||| ||||||||||||||| |||||| ||||||||    
T  51234508 aaattttaaaatagtctctaactatgcatttcgttagtcaaaatagtctctgatgttaaaatgttttattaatattgtcatat 51234426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 8171033 - 8170924
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaat 169  Q
    ||||||||||||||| | |||||||  |||||| |||||||||||||||| || | ||||||| |||||||| | ||| || |||||||||||  |||||    
T  8171033 tagtcataatagtccctcaatgtataaaaatttcaaaatagtctctgattttgcaattcgttagtcaaaataatctctaatattaaaatgtttcattaat 8170934  T
Q  170 actgtcatat 179  Q
    | ||||||||    
T  8170933 attgtcatat 8170924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 73 - 220
Target Start/End: Complemental strand, 52701060 - 52700913
Alignment:
Q  73 tcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatact 172  Q
    |||||||| | | ||| |||||| ||||||||||||||||| || || || | ||| |||||||||||| | | ||||||||||||||||| |||||| |    
T  52701060 tcataataattcttaactgtatctaaattttaaaatagtctatgtttgtgcacttctttaatcaaaatagtctttcatgttaaaatgttttattaatatt 52700961  T
Q  173 gtcatatcaatccgtataagtacttaattattgttatatcaatctcta 220  Q
    |||||| || ||| |  |  ||| |||||||| | |||||||||||||    
T  52700960 gtcataacagtccttcaatatacataattattatcatatcaatctcta 52700913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 38081003 - 38080937
Alignment:
Q  75 ataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 141  Q
    |||||||||||| |||||||| |||||||||||||||||  ||||||| ||||||||| ||||||||    
T  38081003 ataatagtccatcaatgtatcaaaattttaaaatagtctacgattatgcatttcgttagtcaaaata 38080937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 4215232 - 4215168
Alignment:
Q  77 aatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 141  Q
    |||||||| | |||| ||| |||||||||||||||||| |||| || | ||||||||||||||||    
T  4215232 aatagtccctcaatgaatcaaaattttaaaatagtctcggattgtgcacttcgttaatcaaaata 4215168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 46804796 - 46804838
Alignment:
Q  77 aatagtccataaatgtatcgaaattttaaaatagtctctgatt 119  Q
    |||||||| | |||||||| |||||||||||||||||||||||    
T  46804796 aatagtccctcaatgtatcaaaattttaaaatagtctctgatt 46804838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 8756018 - 8755921
Alignment:
Q  88 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatcaatcc 185  Q
    |||||| | ||||||||||||| ||  |||||||| | |||||||||||||||| | ||| |  |||||||  || ||||||| |||||||| |||||    
T  8756018 aatgtaacaaaattttaaaataatcattgattatgcacttcgttaatcaaaatagtctctaacattaaaatacttcgttaatattgtcatattaatcc 8755921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 17381622 - 17381513
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaat 169  Q
    |||||| |||||||| | |||||||| |||||  ||||||||| |||||| || | || ||||||||||||| |   | || ||||||| ||| ||||||    
T  17381622 tagtcacaatagtccctcaatgtatcaaaattccaaaatagtccctgattgtgcactttgttaatcaaaatagtccttgatattaaaatatttcgttaat 17381523  T
Q  170 actgtcatat 179  Q
    | ||||||||    
T  17381522 attgtcatat 17381513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 27298561 - 27298613
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatg 122  Q
    |||| |||||||||| | |||||||| ||||||||||||||||| | ||||||    
T  27298561 tagttataatagtccgtgaatgtatcaaaattttaaaatagtctttaattatg 27298613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 37197637 - 37197545
Alignment:
Q  89 atgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatca 181  Q
    ||||||| || |||||||||||||  |||||  | ||||||||| |||||||| | | | || |||||||||||  |||||| ||||||||||    
T  37197637 atgtatcaaagttttaaaatagtccttgattgggcatttcgttagtcaaaatagtctttaatattaaaatgtttgattaatattgtcatatca 37197545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 175
Target Start/End: Complemental strand, 19206574 - 19206469
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaat 169  Q
    ||||||| ||||||| | |||||||| ||||||||||||||| |||||||||| | || |||| |||||||||| ||| ||||||| |||| || |||||    
T  19206574 tagtcatgatagtcctttaatgtatcaaaattttaaaatagtttctgattatgcactttgttagtcaaaatattctctgatgttaagatgtattattaat 19206475  T
Q  170 actgtc 175  Q
    | ||||    
T  19206474 attgtc 19206469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 12676433 - 12676524
Alignment:
Q  88 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatat 179  Q
    ||||||||||||| |||||||||||| ||||| || | || |||| |||||||| | ||| | ||||||||||||| |||||| ||||||||    
T  12676433 aatgtatcgaaatgttaaaatagtctatgattgtgcacttagttagtcaaaataatttctgacgttaaaatgttttattaatattgtcatat 12676524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 40124298 - 40124369
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 141  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||||||| || | | ||||| ||||||||    
T  40124298 tagtcacaatagtccattaatgtatcgaaattttaaaatggtctctgattgtgcactccgttagtcaaaata 40124369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 181
Target Start/End: Complemental strand, 18903241 - 18903130
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaat 169  Q
    |||||| |||||||  | |||||||||||||| ||||||||| ||||||| || | |  ||||||||||||  | | | ||||||||||| | ||||||     
T  18903241 tagtcacaatagtcattcaatgtatcgaaattctaaaatagtttctgattgtgcactatgttaatcaaaatggtctttaatgttaaaatgctctgttaac 18903142  T
Q  170 actgtcatatca 181  Q
    ||||||||||||    
T  18903141 actgtcatatca 18903130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 181
Target Start/End: Original strand, 23359377 - 23359489
Alignment:
Q  70 tagtcataatagtccataaat-gtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaa 168  Q
    |||||| |||||||| | ||| |||| |||||| ||| ||||||| ||||| || | | ||||| |||||||| | ||| | |||||||||||||||||     
T  23359377 tagtcacaatagtccttcaattgtattgaaattataatatagtctatgattgtgtactacgttagtcaaaatagtctctaacgttaaaatgttttgttac 23359476  T
Q  169 tactgtcatatca 181  Q
    || ||||||||||    
T  23359477 tattgtcatatca 23359489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 14441158 - 14441108
Alignment:
Q  90 tgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaat 140  Q
    |||||||||||||||||||||| | |||||||| |||  ||||||||||||    
T  14441158 tgtatcgaaattttaaaatagtatatgattatgcattatgttaatcaaaat 14441108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 170
Target Start/End: Original strand, 28834674 - 28834756
Alignment:
Q  88 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaata 170  Q
    |||||||| |||| ||||||||||||||||||||| | ||  | || ||||||| | ||||  |||||||||||| |||||||    
T  28834674 aatgtatcaaaatcttaaaatagtctctgattatgtactttatcaagcaaaataatctctcgcgttaaaatgtttcgttaata 28834756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 1517582 - 1517623
Alignment:
Q  78 atagtccataaatgtatcgaaattttaaaatagtctctgatt 119  Q
    ||||||| | |||||||||||||||||||||||||| |||||    
T  1517582 atagtccttcaatgtatcgaaattttaaaatagtctttgatt 1517623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 6788558 - 6788509
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgatt 119  Q
    ||||||||||||||  | |||||||| ||||||||||||||| |||||||    
T  6788558 tagtcataatagtcattcaatgtatcaaaattttaaaatagtttctgatt 6788509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 39095105 - 39095157
Alignment:
Q  82 tccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaat 134  Q
    ||||| |||||||| ||||||||||||||| ||||||| || |||| ||||||    
T  39095105 tccatcaatgtatcaaaattttaaaatagtatctgattgtgcattttgttaat 39095157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 42657786 - 42657834
Alignment:
Q  74 cataatagtccataaatgtatcgaaattttaaaatagtctctgattatg 122  Q
    ||||||||||||| |||||||  ||||||||||||| | ||||||||||    
T  42657786 cataatagtccattaatgtattaaaattttaaaataatatctgattatg 42657834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 30519045 - 30519224
Alignment:
Q  40 attttggtctttgaatgtgtaacaatcggttagtc-ataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaa 138  Q
    ||||||||| |||||||||||||||     ||||| | |||||||| ||||||||||||||||| |||||||||||||||| |  | ||  |   |||||    
T  30519045 attttggtccttgaatgtgtaacaaa----tagtccacaatagtccttaaatgtatcgaaatttcaaaatagtctctgattgtacactttatatgtcaaa 30519140  T
Q  139 atattatctcatgttaaaatgttttgttaatactgtcatatcaatccgtataagtacttaattattgttatatcaatctctataa 223  Q
    ||| | ||||  ||||||||||| ||||||||| |||||| |||||| |  |  |||||| ||| ||| ||||||||||||||||    
T  30519141 atagtctctcgcgttaaaatgttctgttaatacagtcataccaatccctcaatatacttactta-tgtcatatcaatctctataa 30519224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 2473251 - 2473154
Alignment:
Q  87 aaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatcaatcc 185  Q
    ||||||||| ||||| ||||||| ||||| |||||  | || ||||||| ||||| | |||| |||||||||||| |||||||||||| ||||||||||    
T  2473251 aaatgtatc-aaattataaaataatctctaattatccactttgttaatcgaaatagtctctcgtgttaaaatgttatgttaatactgttatatcaatcc 2473154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 179
Target Start/End: Complemental strand, 30050694 - 30050557
Alignment:
Q  38 ttattttggtctttgaatgtgtaacaatcggttagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaa 137  Q
    |||||||||||||||||| |||||  ||    ||| || |||||||| | ||||||||||||||| |||||||||| |||||||| | || |||| ||||    
T  30050694 ttattttggtctttgaatttgtaatgat----tagccaaaatagtcccttaatgtatcgaaatttcaaaatagtctatgattatgcaatttgttagtcaa 30050599  T
Q  138 aatattatctcatgttaaaatgttttgttaatactgtcatat 179  Q
    |||| | |||||  ||||||| | | ||||||| || |||||    
T  30050598 aatagtctctcacattaaaatatctcgttaatattgacatat 30050557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 2261953 - 2261987
Alignment:
Q  88 aatgtatcgaaattttaaaatagtctctgattatg 122  Q
    |||||||||||||||||||||||||||||||||||    
T  2261953 aatgtatcgaaattttaaaatagtctctgattatg 2261987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 2262219 - 2262135
Alignment:
Q  75 ataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatg 159  Q
    |||||||||| | ||||||| |||||||||||||||| ||| |||||| ||||  ||||| |||||| | | | |||||||||||    
T  2262219 ataatagtcctttaatgtattgaaattttaaaatagtatctaattatgcattttattaattaaaatagtctattatgttaaaatg 2262135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 4214539 - 4214455
Alignment:
Q  97 aaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatca 181  Q
    ||||||||||||||||   |||| | |||| ||||| |||||||| ||||| ||||| |||| || |||||||||| ||||||||    
T  4214539 aaattttaaaatagtccacgattttaaattacgttagtcaaaatagtatctgatgttcaaatattgtgttaatactatcatatca 4214455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 38445241 - 38445173
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaa 138  Q
    |||||| |||||||| | |||||||||||||| ||||||||||| ||||| || | ||| |||||||||    
T  38445241 tagtcacaatagtcctttaatgtatcgaaattctaaaatagtctttgattgtgcacttccttaatcaaa 38445173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 305
Target Start/End: Complemental strand, 35607369 - 35607217
Alignment:
Q  152 ttaaaatgttttgttaatactgtcatatcaatccgtataagtacttaattattgttatatcaatctctataagnnnnnnngttattgtcaacattgaaga 251  Q
    |||||||||||| |||||  |||| ||||||||  ||||| || ||| ||||||  |||||||||| |||| |       ||||||||||| |||||||     
T  35607369 ttaaaatgttttattaatgttgtcttatcaatctttataaatatttatttattggcatatcaatctttatatgaaaagt-gttattgtcaatattgaagg 35607271  T
Q  252 actattagaacgtcaatgactattttgactatcgaaatgcacatccaaaaacta 305  Q
    | ||||  |||||||  || ||||||||||| |||||||||||  |||||||||    
T  35607270 attattttaacgtcatagattattttgactaacgaaatgcacaatcaaaaacta 35607217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 39162678 - 39162617
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgtta 132  Q
    |||||| |||||||| | ||||||||||||||||||||| |||| | |||||| |||||||||    
T  39162678 tagtcacaatagtccttcaatgtatcgaaattttaaaatggtct-taattatgcatttcgtta 39162617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 206
Target Start/End: Complemental strand, 45679792 - 45679674
Alignment:
Q  88 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatcaatccgt 187  Q
    |||||||  |||||||||||||||   ||||| || | ||||||| |||||||| |  || |||||||||| |||| |||| | ||| ||||  |||| |    
T  45679792 aatgtataaaaattttaaaatagttcatgattgtgcaattcgttagtcaaaatagtccctaatgttaaaatattttattaaaattgttatattcatcctt 45679693  T
Q  188 ataagtacttaattattgt 206  Q
    ||||||||||| |||||||    
T  45679692 ataagtacttacttattgt 45679674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 16192316 - 16192267
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgatt 119  Q
    ||||||||||| ||| | |||||||| ||||||||||||||| |||||||    
T  16192316 tagtcataatattccttcaatgtatcaaaattttaaaatagtttctgatt 16192267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 18894627 - 18894719
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttt 162  Q
    ||||||||||||||  | ||| ||||||||||||||| |||||  |||||||  | ||| |||||||||| | |  ||||||||||| |||||    
T  18894627 tagtcataatagtctttgaatatatcgaaattttaaagtagtcgttgattatacacttccttaatcaaaaaaatccctcatgttaaagtgttt 18894719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 181
Target Start/End: Original strand, 89060 - 89154
Alignment:
Q  87 aaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatca 181  Q
    ||||||||||||||| ||||||||||  ||||| |||| ||  ||| |||||||| | |||| ||||||||| |||||| |||| ||||||||||    
T  89060 aaatgtatcgaaattgtaaaatagtccgtgattgtgaactttattagtcaaaataatctctcgtgttaaaatattttgtcaatattgtcatatca 89154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 109233 - 109324
Alignment:
Q  232 gttattgtcaacattgaagaactattagaacgtcaatgactattttgactatcgaaatgcacatccaaaaactagattaaaatttcgatacat 324  Q
    |||||||||||||| || | ||||||  ||||||| |||||| |||||||| | || ||||||| |||  ||||  |||||||||||||||||    
T  109233 gttattgtcaacatcgagggactattttaacgtcagtgacta-tttgactagcaaagtgcacattcaatgactattttaaaatttcgatacat 109324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 2096366 - 2096272
Alignment:
Q  86 taaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatc 180  Q
    ||||||||| |||||| ||||||||||  ||||| || ||||| |||||||||||| | |||| |||| |||| ||||||||||| | |||||||    
T  2096366 taaatgtattgaaattctaaaatagtcaatgattgtgtatttcattaatcaaaatagtctctcgtgttgaaatattttgttaatattatcatatc 2096272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 48048104 - 48048014
Alignment:
Q  88 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcata 178  Q
    ||||||||||||||  |||| |||| |||||| || ||||||||  |||||||| |  |||  ||||||||||||||||||||||||||||    
T  48048104 aatgtatcgaaattccaaaacagtccctgattgtgcatttcgtttgtcaaaatagtccctcgcgttaaaatgttttgttaatactgtcata 48048014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 31198107 - 31198178
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 141  Q
    ||||||||||||||  |||||||||| |||||| |||||||| ||  |||||| |||| |||||||||||||    
T  31198107 tagtcataatagtcactaaatgtatcaaaatttcaaaatagtttccaattatgcattttgttaatcaaaata 31198178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 47944621 - 47944550
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 141  Q
    |||||| ||| |||| | ||||||| |||||||||||||||||| ||||| || | ||||||||||||||||    
T  47944621 tagtcacaattgtccttgaatgtattgaaattttaaaatagtctttgattgtgcacttcgttaatcaaaata 47944550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 22235228 - 22235330
Alignment:
Q  77 aatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtca 176  Q
    |||||||| | |||||||  |||||| ||||||||| |||||| |  | ||||||| |||||||| | ||||| ||||||||||| | |||||||| |||    
T  22235228 aatagtccttgaatgtattaaaatttcaaaatagtcgctgattgtacacttcgttagtcaaaatagtctctcacgttaaaatgttctattaatactatca 22235327  T
Q  177 tat 179  Q
    |||    
T  22235328 tat 22235330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 38989763 - 38989815
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatg 122  Q
    |||||| |||||||||| |||||||| ||||||||||||||||  ||||||||    
T  38989763 tagtcacaatagtccatcaatgtatcaaaattttaaaatagtccgtgattatg 38989815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 14984440 - 14984555
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaat 169  Q
    |||||| |||||||| | ||| ||||||||||| |||||| || |||||| || | ||||||| |||||||| |  || |  ||||||| ||| ||||||    
T  14984440 tagtcacaatagtccctcaatatatcgaaatttcaaaatactccctgattgtgcacttcgttagtcaaaatagttcctgacattaaaatatttcgttaat 14984539  T
Q  170 actgtcatatcaatcc 185  Q
    | |||||||| |||||    
T  14984540 attgtcatattaatcc 14984555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 17573260 - 17573211
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgatt 119  Q
    |||||||||||||| || ||||||||||||||| ||| | ||||||||||    
T  17573260 tagtcataatagtctatcaatgtatcgaaatttcaaattggtctctgatt 17573211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 40619262 - 40619213
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgatt 119  Q
    |||||||| || ||| | |||||||| |||||||||||||||||||||||    
T  40619262 tagtcatattaatccctcaatgtatcaaaattttaaaatagtctctgatt 40619213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 47944335 - 47944388
Alignment:
Q  88 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 141  Q
    |||||||||||||||||||||||||| ||||| || | || |||| ||||||||    
T  47944335 aatgtatcgaaattttaaaatagtctttgattgtgcactttgttagtcaaaata 47944388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 34703663 - 34703771
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaat 169  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||| ||| |  | |||||| ||||||||| | ||| |  ||||||| |||||| |||    
T  34703663 tagtcacaatagtccatcaatgtatc-aaattttaaaatagtctctaattgttcacttcgttgatcaaaatagtctctaactttaaaatattttgtcaat 34703761  T
Q  170 actgtcatat 179  Q
    | ||||||||    
T  34703762 attgtcatat 34703771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 23441491 - 23441558
Alignment:
Q  74 cataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 141  Q
    ||||||||||| | ||||||||||||||||||||||||   ||||| || | ||||||||||||||||    
T  23441491 cataatagtccttcaatgtatcgaaattttaaaatagttattgattgtgcacttcgttaatcaaaata 23441558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 10228750 - 10228832
Alignment:
Q  86 taaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaa 168  Q
    ||||||||||||||||| |||||||||| ||||| || | ||||||| |||||||| | | | |  |||||||||||||||||    
T  10228750 taaatgtatcgaaatttcaaaatagtctttgattgtgcaattcgttagtcaaaatagtctttgaccttaaaatgttttgttaa 10228832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 24352396 - 24352481
Alignment:
Q  130 ttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatcaatccgtataagtacttaattattgttatatcaatc 216  Q
    |||||||||||| |||||| |||||||||||| || ||||||||||||||||| || || |  |||||| ||| ||| |||||||||    
T  24352396 ttaatcaaaatagtatctcgtgttaaaatgttatg-taatactgtcatatcaaaccctaaacatacttacttactgtcatatcaatc 24352481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 38838754 - 38838647
Alignment:
Q  30 ggtaatgattattttggtctttgaatgtgtaacaatcggttagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcg 129  Q
    |||||| ||||||||||||  |||||||||||| |     |||||| |||| || || |||||||  ||||||||||||||||||||||| || |||| |    
T  38838754 ggtaataattattttggtccctgaatgtgtaacgag----tagtcacaatattctatcaatgtattaaaattttaaaatagtctctgattttgcattttg 38838659  T
Q  130 ttaatcaaaata 141  Q
    ||| ||||||||    
T  38838658 ttagtcaaaata 38838647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 23474545 - 23474629
Alignment:
Q  74 cataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaat 158  Q
    ||||||||||| | |||||||| |||||||||||||||   ||||| || | |||||||||||||||| | | | ||||||||||    
T  23474545 cataatagtccttcaatgtatcaaaattttaaaatagttattgattgtgcacttcgttaatcaaaatagttttttatgttaaaat 23474629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 23457883 - 23457816
Alignment:
Q  74 cataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 141  Q
    ||||||||||| | ||||||||||||||||||||||||   ||||| || | || |||||||||||||    
T  23457883 cataatagtccttcaatgtatcgaaattttaaaatagttattgattgtgcactttgttaatcaaaata 23457816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 23532883 - 23532950
Alignment:
Q  74 cataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 141  Q
    ||||||||||| | || |||||||||||||||||||||   ||||| || | ||||||||||||||||    
T  23532883 cataatagtccttcaaggtatcgaaattttaaaatagttattgattgtggacttcgttaatcaaaata 23532950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 5358248 - 5358290
Alignment:
Q  77 aatagtccataaatgtatcgaaattttaaaatagtctctgatt 119  Q
    |||||||| | |||||||| |||||||||||||||||||||||    
T  5358248 aatagtccttcaatgtatcaaaattttaaaatagtctctgatt 5358290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 23533159 - 23533114
Alignment:
Q  96 gaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 141  Q
    ||||||||||||||||||||||||||| |||| |||| || |||||    
T  23533159 gaaattttaaaatagtctctgattatgcattttgttagtctaaata 23533114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 184
Target Start/End: Original strand, 30990994 - 30991055
Alignment:
Q  123 aatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatcaatc 184  Q
    ||||||||||||||| ||||||||| || |||||||||||  |||||| ||| ||| |||||    
T  30990994 aatttcgttaatcaagatattatctaatattaaaatgtttcattaatattgttatagcaatc 30991055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 23474819 - 23474783
Alignment:
Q  96 gaaattttaaaatagtctctgattatgaatttcgtta 132  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  23474819 gaaattttaaaatagtctctgattatgcattttgtta 23474783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 32996567 - 32996503
Alignment:
Q  77 aatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 141  Q
    |||||||| | |||| ||| ||||| ||||||||||||||||| || | || |||||||||||||    
T  32996567 aatagtccctcaatgcatcaaaattctaaaatagtctctgattgtgcactttgttaatcaaaata 32996503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 162
Target Start/End: Original strand, 23159062 - 23159155
Alignment:
Q  69 ttagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttt 162  Q
    ||||| |||||||||||| |||||||| ||||||||||||||| | ||||| || ||||||||| | |||||| |  || ||||| ||||||||    
T  23159062 ttagttataatagtccatcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtaaaaatagtccctgatgttgaaatgttt 23159155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 3599847 - 3599938
Alignment:
Q  88 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatat 179  Q
    ||||||| |||||||||||||||| | ||||| || |||| ||||||||||||  | ||||| |||||||| ||| || |||| ||||||||    
T  3599847 aatgtattgaaattttaaaatagtgtttgattgtgtattttgttaatcaaaatggtctctcacgttaaaatatttcgtaaatattgtcatat 3599938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 179
Target Start/End: Complemental strand, 917231 - 917121
Alignment:
Q  69 ttagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaa 168  Q
    ||||||| ||| |||| | |||||||||||||||||||||||||| ||||| |  | ||  || ||||||||| | |||||   |||||| |||||||||    
T  917231 ttagtcacaatcgtccctcaatgtatcgaaattttaaaatagtctttgattgtacactttatttatcaaaatagtctctcacaataaaatattttgttaa 917132  T
Q  169 tactgtcatat 179  Q
    || ||||||||    
T  917131 tattgtcatat 917121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 9607139 - 9607185
Alignment:
Q  73 tcataatagtccataaatgtatcgaaattttaaaatagtctctgatt 119  Q
    |||||||| ||||| |||||||| |||||||||||||||||||||||    
T  9607139 tcataataatccatcaatgtatcaaaattttaaaatagtctctgatt 9607185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 22579575 - 22579505
Alignment:
Q  71 agtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 141  Q
    ||||| |||||||||| |||||||| ||||||||||||| || ||||||||  | || |||||||||||||    
T  22579575 agtcacaatagtccatcaatgtatcaaaattttaaaataatccctgattatacactttgttaatcaaaata 22579505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 26675045 - 26675147
Alignment:
Q  77 aatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtca 176  Q
    ||||||| || |||||||| ||||||||||||| ||||| |||||| |||| |||| |||||||| |   | |||||||||| |||  |||||| |||||    
T  26675045 aatagtctattaatgtatcaaaattttaaaataatctcttattatgtattttgttagtcaaaataattcataatgttaaaatatttcattaatattgtca 26675144  T
Q  177 tat 179  Q
    |||    
T  26675145 tat 26675147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 26946653 - 26946755
Alignment:
Q  77 aatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtca 176  Q
    ||||||| || |||||||| ||||||||||||| ||||| |||||| |||| |||| |||||||| |   | |||||||||| |||  |||||| |||||    
T  26946653 aatagtctattaatgtatcaaaattttaaaataatctcttattatgtattttgttagtcaaaataattcataatgttaaaatatttcattaatattgtca 26946752  T
Q  177 tat 179  Q
    |||    
T  26946753 tat 26946755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 7756407 - 7756512
Alignment:
Q  32 taatgattattttggtctttgaatgtgtaacaatcggttagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgtt 131  Q
    |||||||||||||||||||||||||||||| ||     |||||| ||| |||| | | |||||||||||| |||| ||||| || ||| |||| || |||    
T  7756407 taatgattattttggtctttgaatgtgtaagaa----gtagtcagaatggtccttgattgtatcgaaattataaattagtcccttattgtgaactttgtt 7756502  T
Q  132 aatcaaaata 141  Q
    | ||||||||    
T  7756503 agtcaaaata 7756512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 9607454 - 9607361
Alignment:
Q  88 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatca 181  Q
    |||||||| ||||| ||||| |||| |||||| || ||||  |||||||||||| |  ||| ||||||||||||  |||| || ||||||||||    
T  9607454 aatgtatccaaattctaaaacagtcactgattgtgcattttcttaatcaaaataatccctcgtgttaaaatgttccgttagtattgtcatatca 9607361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 21600438 - 21600545
Alignment:
Q  72 gtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatac 171  Q
    |||| |||||||| | |||||||| ||||||||||||||||  ||||| || ||||||||||| ||| || |  || |||||||||| |||  ||||||     
T  21600438 gtcacaatagtcccttaatgtatcaaaattttaaaatagtcattgattgtgcatttcgttaataaaattagtcactgatgttaaaatatttcattaatat 21600537  T
Q  172 tgtcatat 179  Q
    ||||||||    
T  21600538 tgtcatat 21600545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 179
Target Start/End: Original strand, 2986914 - 2987022
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaat 169  Q
    |||| |||||||||| | |||| ||| ||||||||||||||| | ||||  || |||| |||| |||||||| ||| | ||||||||||||||  |||||    
T  2986914 tagttataatagtcctttaatgcatcaaaattttaaaatagtttatgatg-tgcattttgttagtcaaaatagtatttaatgttaaaatgtttcattaat 2987012  T
Q  170 actgtcatat 179  Q
    ||| ||||||    
T  2987013 actatcatat 2987022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 21145699 - 21145619
Alignment:
Q  78 atagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaat 158  Q
    |||||| || || |||||||||||  ||||||||||| |||||||  |||||||| |||||||| | ||| ||||||||||    
T  21145699 atagtctatcaacgtatcgaaattccaaaatagtctcagattatgcgtttcgttagtcaaaatagtctctgatgttaaaat 21145619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 30841094 - 30841146
Alignment:
Q  129 gttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatca 181  Q
    ||||||||||||| ||||| |||||||||||||| ||||||  ||||||||||    
T  30841094 gttaatcaaaataatatctgatgttaaaatgtttcgttaatcttgtcatatca 30841146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 28929581 - 28929526
Alignment:
Q  86 taaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaata 141  Q
    ||||||||||||||||| | |||||| |||||||||| | ||||||| ||||||||    
T  28929581 taaatgtatcgaaatttcataatagtttctgattatgcacttcgttagtcaaaata 28929526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 41616693 - 41616828
Alignment:
Q  88 aatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatatcaatccgt 187  Q
    ||||||| |||||||||||||| ||| |  ||||| | ||||||| |||||||| | |   || |||||||||||| |||||| | |||| ||| ||| |    
T  41616693 aatgtattgaaattttaaaataatcttttgttatgcacttcgttagtcaaaatagtctacgatattaaaatgttttattaataatatcatttcagtcctt 41616792  T
Q  188 ataagtacttaattattgttatatcaatctctataa 223  Q
     ||  |||||| ||||||| |||||||||| |||||    
T  41616793 ttatatacttatttattgtcatatcaatctttataa 41616828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 44362699 - 44362617
Alignment:
Q  97 aaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaatactgtcatat 179  Q
    ||||||||||||||| ||||||| || | ||||||| |||||||| | | | |||||||||| |||  ||||||||| |||||    
T  44362699 aaattttaaaatagtttctgattgtgtaattcgttagtcaaaatagtctataatgttaaaatatttcattaatactgacatat 44362617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 140
Target Start/End: Complemental strand, 7681073 - 7681012
Alignment:
Q  79 tagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaat 140  Q
    |||||| | |||||||| ||||||||||||||| | ||||| || ||||||||| |||||||    
T  7681073 tagtccctcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtcaaaat 7681012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 10708676 - 10708583
Alignment:
Q  77 aatagtccataaatgtatcgaaattttaaaatagtctctgattatgaatttcgttaatcaaaatattatctcatgttaaaatgttttgttaata 170  Q
    |||||||||| |||||||  ||||||||||||||||| |||||||  |||  |||| |||||||| |  |  | |||||||| |||||||||||    
T  10708676 aatagtccattaatgtatataaattttaaaatagtctttgattatatattatgttagtcaaaataatcacctacgttaaaatattttgttaata 10708583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 21601941 - 21601990
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgatt 119  Q
    |||||| |||||||||| |||||||| |||||  ||||||||||||||||    
T  21601941 tagtcacaatagtccatcaatgtatcaaaattccaaaatagtctctgatt 21601990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 33508452 - 33508502
Alignment:
Q  70 tagtcataatagtccataaatgtatcgaaattttaaaatagtctctgattatg 122  Q
    ||||||||||||||||  |||||||| |||||  |||||||||||||||||||    
T  33508452 tagtcataatagtcca--aatgtatcaaaattccaaaatagtctctgattatg 33508502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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